© Distribution of this video is restricted by its owner
Transcript ×
Auto highlight
Font-size
00:10 Yeah. Yeah. Okay. Okay. Fish. Okay.

01:33 Testing. Testing. Testing 1 Testing. Okay, folks.

01:50 Yeah. Okay. Okay. Um today I'm gonna finish up, We

02:04 viruses and then get into metabolism in 13. So, uh so there'll

02:13 a number of questions and other other slides around the metabolism.

02:21 um like I said, um, we get into that, and if

02:27 look through your book, it could a hairy kind of um God,

02:33 is this I'm looking at here with these pathways and things. So try

02:38 to really learn something, but I to get out of it, or

02:44 , you know, a few concepts relate to biologics, of course,

02:49 process of reparation, but not bogged in all the little all the various

02:57 that go on. Okay. All various reactions that go on.

03:04 uh how about memorizing each reaction and each enzyme? It's not that at

03:10 . Right. So, it's more learning to processing stages what's going in

03:14 coming out? Um And again, could be underlined kind of concepts that

03:22 um that support the whole the notion mechanism respiration, how lights. I

03:33 , we're talking about in the context precarious, but of course applies there

03:38 applies to you and me and all , um is how we exist.

03:46 know, these basic concepts of metabolism how you get energy from the

03:51 Um so, we'll we'll get into and don't be so that like black

04:00 them. I mean, every every clicker question here is two points

04:05 it's right or wrong. Okay, , I want to get away from

04:09 getting so tunnel visioned on grades and f it, you know, just

04:15 about the question of concept and get brain work. Don't obsess so much

04:21 points to make points that's right or . But do otherwise of questions.

04:29 are not getting right or wrong, . Okay, so, but my

04:35 there is, you know, you you're answering questions and maybe we want

04:41 take it seriously, but if you well then you're not all right.

04:46 then ultimately, you know, that's how you But the point is to

04:50 away from this obsession with I gotta this pair of that, and that's

04:54 you think about you lose sight of whole what you're even learning. So

04:58 trying to do. So anyway, that's that's reporting. So let's finish

05:05 with a couple of things already emailed this morning about this, so uh

05:11 don't think I need to say So stuff is due this week just

05:15 be aware of. That uh backward will open after class today. There

05:21 there will be like three questions on 13 stuff. I think it's like

05:27 or 10 questions total nine plus one Three of the questions are related to

05:32 tractor, 13 stuff we'll talk about , and the rest are on

05:37 Okay. Um Okay, so let's let's start with this one.

05:43 This is the old plus minus. right, So take a look at

05:49 . We're going to start with And kind of recap that kind of ended

05:53 last time. So here we have name, virus possessing a single plus

05:59 strand um as its genome. Uh wouldn't have to first transcribe this into

06:10 minus antisense strand, then translate from minus antisense strand into proteins.

06:16 true or false. It's all Okay, so hi Amber.

06:27 Plus our day virus. What's it to do in terms of translation?

06:51 . Okay, we're gonna time or . So answer something 10.

07:02 lets see majority says false. And is true. The default answer is

07:11 . Alright, okay. So let's like a little flow chart here.

07:20 we go. So uh that that lens I RNA dependent RNA polymerase.

07:25 . It's gonna copy that plus genome a minus genome. Um And then

07:33 course that's not translatable. Right? not a template to make a

07:38 It's a template to to produce a in time. So you can't translate

07:46 . Alright, so um it would to go this route and go back

07:53 plus R. N. A. that can be translatable. Right?

07:56 so could translate this to write. it's a numbers game. Right?

08:03 need to have lots of stuff if a virus. And you're making lots

08:06 viral progeny projects require lots of proteins assemble and lots of genomes insert

08:13 So is work more efficient to make of stuff and then make hence you

08:20 lots of proteins and things Great quick . All right. So um and

08:28 we looked at these uh sites we of put through everything on here.

08:34 more or less talked about last So uh so differences between RNA and

08:39 viruses remember that they're you know, there's outliers in both groups but most

08:46 viruses behaviors behave this way. Most viruses behave that way. Okay.

08:52 then as we just talked about the and minus things that have already

08:57 Okay, and again, as I uh explained to a student today and

09:06 um this this plus minus thing is a future. Just because we haven't

09:11 talking about viruses. It's a future every living thing on this planet that

09:17 nucleic acids. Okay. You bring cockroach a mouse of where?

09:25 They have to take acids and you about these molecules when you talked about

09:29 them and otherwise using the plus and . Alright. Just complementary. It

09:38 so happens there are viruses that their be a single strength in the that

09:44 be against that. You know that of because all depends on What's that

09:53 template board. Alright. Can that uh violent Juno will be a template

10:01 where can clock right on making Well then. Oh then it's

10:05 It's a plus. Right, The information is already there. Right.

10:09 can do its name or it's a strength. It's a template to maine

10:15 transfer to make an to make a drink. Okay, so uh so

10:22 keep that in mind. Right? always keep in mind uh what's the

10:27 ? Right. Because it needs lots genomes are certain to be assembling catches

10:32 there's lots of proteins to make those . Right? So that's what we're

10:35 these steps here in here. And the way to make proteins. The

10:39 to make copies of genomes and to it all together that um and I

10:46 threw this one in here. And they can't create viruses. Animal

10:50 Okay, uh can evolve vestibule formation fusion with that range encoding the encoding

10:59 . Right. Getting the genome released them so they can name one to

11:04 processes here and uh Right. Um questions? So that's kind of the

11:13 virus here we can talk about is . Okay, so HIV is a

11:21 feline leukemia virus is a retrovirus among . And so again, always begin

11:27 the with the uh what's the product . Okay, so um so

11:40 Richard barges are having RNA genome. , but they are the oddballs

11:45 Okay. Unlike the other groups of viruses, They they're gonna go around

11:51 DNA. They have a DNA That's what differentiates them. So when

11:56 see references to Redford virus, what viruses in general I at least will

12:03 will specify um a non retroviral RNA . Okay. If I just simply

12:12 to viruses without these guys because he's a unique group. Okay so retrovirus

12:20 union comedian. Okay so they have is a viral enzyme reverse transcriptase.

12:27 we don't have that materials don't hand in time. Okay. And because

12:32 don't copy our our nation the N. A. Okay of course

12:35 do into a plus and minus Right so A. Plus R.

12:41 . A. Gino. And so again plus minus relationship. It doesn't

12:48 if it's between between RNA and RNA and DNA. DNA and

12:53 Okay. You always have that So they were popular to the complimentary

13:00 transcribe into the minus strand of. and then it will use host race

13:09 make a double stranded double stranded Okay and I have to do

13:18 Why I can't just be staying as single strand of DNA. Mhm.

13:24 that what? Well that's true It won't it's not really not stable

13:27 a and inside the cell. The it's gonna put that song on alert

13:34 gonna be great. More likely. but aside from that the coronavirus is

13:39 that integrates. Right? So it's to have to interview with double stranded

13:45 because that's what the chromosome is double DNA. So that's how it's going

13:48 insert into the chromosome by having a stranded DNA. For Okay. So

13:54 can start to the host. The host you can't well in that

14:00 was a pro virus. Right? with with retroviruses um we had the

14:09 of age. Right. Let the . Oh, ginny, right.

14:12 of appropriation in searching the crumbs So so for animal viruses that do

14:17 and there are others certainly besides there's DNA viruses and viruses can do

14:23 what we call it a provider and is a distinct and they're integrated into

14:27 host chromosome. Um so while in state they can direct synthesis of transcripts

14:34 virus production. Right. And we'll in the next five a lifestyle

14:42 And so again it's a process storage transcripts translating developed proteins assembly just like

14:54 other viral cycles. Jack. Except course this has the DNA intermediate in

15:00 . Right, So with the retrovirus cycle. Okay, so these are

15:06 specific in terms of very narrow narrow range. Okay. And narrow tissue

15:14 . Right. Really? In fact type of self okay, we'll talk

15:18 this later this semester to help Very important in the controlling the overall

15:25 response. Um have have specialized functions their own. Okay, so the

15:35 infects these. Okay, you can it does. So through um obviously

15:41 have recognition of receptor proteins on that cell T helper cell and gains

15:49 So the encoding process occurs here is reverse transcriptase viral enzyme eventually get to

15:56 double stranded DNA copy. So this going to occur. Yes, of

16:01 where the host chromosome is right. then uh so it's integrated. So

16:07 is the pro virus state. Um we see it inserted right

16:15 And so while in that state. , what we call a latent state

16:20 often subscribe to that. Um so a latent state is when the virus

16:28 serving here in the chromosome but there's no no symptoms in the host.

16:36 ? Um it's kind of sitting Okay. And it can be in

16:40 state for several months, even Okay. And but it can as

16:47 began to initiate low level viral production you see here. Okay, so

16:53 gonna have translation outside of this. , the assembly is actually occurring outside

16:59 the piece as well. And then budding process. Remember that cells can

17:06 of pinch viruses rather than kind of off the membrane so had around

17:13 And in doing so, a low of production occurs itself is still

17:19 Okay. But um but sharing Okay. And so so at this

17:28 , so it can be so the can be in a state where it's

17:33 going anywhere recommended assembly of viruses. you can begin at low level of

17:41 production. But it'll still take a to build up enough levels of this

17:46 it becomes detectable in the blood. . So of course when it does

17:51 then one years HIV positive. That's retrovirus. So um and so that

18:00 course over time then there's these viruses up. They don't want to infect

18:04 salaries. Okay, eventually killing those . And so the HIV virus will

18:14 it infects these to help ourselves and to help ourselves actually do affect the

18:21 that form antibodies. B cells we'll about those later um and also have

18:27 on their own that by killing these cells are really almost obliterating the immune

18:33 , adaptive immune system which is critical of the immune system. And so

18:38 with that guys just don't die necessarily the HIV virus. They die from

18:43 like pneumonia. Very typical because they they can't prevent the bacterial infection.

18:50 it's fun to it. So, there are a number of drugs to

18:55 the effects of retrovirus HIV form. uh of course we'll make targets is

19:05 retro reverse transcriptase virus specific amazon. that's part for a number of antiviral

19:14 those that have access to the proper . It's like a cocktail like nine

19:21 antiviral drugs that are taken. But know nowadays and it happened for 15

19:27 or more 20 years now that treatments pretty effective. And those with HIV

19:33 deposits can can live a long productive with the magic jobs. Right?

19:41 I mean, I know David. , but you know, magic johnson

19:45 . Yeah. Okay now. Ah He was a hall of Fame

19:50 player for the Lakers. And I announced he was HIV positive in the

19:57 90's 91, and uh And he's strong. You know, it's what

20:05 30 something years later. So, there's parts of this world where HIV

20:13 is is endemic and is epidemic in locations in under underdeveloped nations. And

20:20 all about, that's all about access the drugs and that's that's a whole

20:24 issue. Economic and political and So, but you do have access

20:29 the treatment and it's pretty effective. . Um not like it was 30

20:35 40 years ago. He just broke uh at that time. So

20:42 Any questions. Yes. So for uh or the D. N.

20:48 . Doesn't happen for the reverse constituencies of the nucleus. So what,

20:55 what did the exercises from the chromosome meet for the for the reverse transcriptase

21:02 the RNA. The plus R. . A. For the retrovirus.

21:06 the for making it uh double stranded . Doesn't happen out of the nucleus

21:11 the eukaryotic cell. Yes. well, what will happen is it

21:19 um transcribe D. N. Into plus copies of the genome using

21:25 enzymes um is correct. You're That's right. If there are questions

21:35 leave the latest thing um likely uh going to be a function of the

21:45 ramping up production and then taking a on the host. So I was

21:50 initiate that as the host cell begins decline in terms of function. So

21:55 that's what happened. The other Yes. All right. Just to

22:03 , we consider like any virus or virus once it's integrated into the I

22:08 say yes you refer to it as . I refer to it as like

22:13 pro virus state. Okay so it be you can be in that state

22:17 not being a state but but um certainly the only ones that are capable

22:21 that would be a DNA virus or , an ordinary virus that's a non

22:27 type wouldn't do that because they don't a D. N. A.

22:32 . You have to have and the life cycle would have to be a

22:36 . N. A. Forum like integrated to the and it doesn't have

22:41 . You know, it's not capable doing that. And of course the

22:44 retroviral are you a virus types our they can't integrate. Yeah.

22:55 Um So on to me to me leads to shame. Okay so viruses

23:07 butting off right now. You have accumulated them outside the cell and you

23:14 say they're almost kind of synonymous to . I think button is kind of

23:19 of the actual process of it And shedding is kind of like what

23:24 see as as these are accumulating around cell kind of thing. So that's

23:29 yeah, that's how I get. . Okay. Yeah. Um All

23:38 . So host resistance so I mentioned that with bacterial resistance to veg that

23:46 a common feature is just a mutation in the population that alters the surface

23:55 protein like protein and have you uh so that the virus doesn't recognize it

24:02 binds only very weakly to it. if that happens then of course the

24:07 factory is either the gated or is in fact um RNA interference is widespread

24:17 you carriers um Archaea as well. and so there are these are we'll

24:24 about these also later in the Unit . Um so these can interfere with

24:31 replication of viral protein expression. Another we'll talk about this as well.

24:39 The last quarter of course on medical but we're already aware of this mechanism

24:46 down to the immune response producing antibodies response to virus 20 your primary um

24:54 the to what we call neutralized There's neutralizing antibodies that will bind to

25:02 surface of the virus and uh that the virus from attaching to its host

25:08 certainly interfering with its ability to attach its host. Um And then there's

25:16 innate immune response. So innate immune are or what you're born with these

25:21 things like the physical barrier, micro is part of your naked response.

25:28 So interfering with potentially different types of specific chemicals in your body, our

25:35 immune defenses. And so one of chemicals is interfering and it acts to

25:42 I'm gonna show you easier on this here. Okay. Um so the

25:48 um the virus infects itself. Okay initial cells to get infected will um

25:58 virus infection initiates the production of Okay. See and that refers produced

26:06 is I. M. For okay. In that infect itself then

26:12 interfering little diffuse out of the cell uh interact with neighboring cells.

26:20 now there's neighboring cells that have yet be infected. They're the ones that

26:24 protected attention. Right? So they a receptor for interference. Then the

26:30 will come in and induce production of proteins. Okay. And it's in

26:36 uninfected sounds nearby that can and negate infection because they're affected from it

26:45 Okay so um and so again that refused to any of the cells in

26:51 surrounding area that can they can then protected which I so um we'll talk

26:57 little bit more about that again when get to innate immune system but it

27:04 certainly a defense. You have um . Any questions before we flip the

27:15 to your metabolism. Okay but when screaming out of the doorway and we

27:19 talking about the capitalism. Um so we're gonna begin with question,

27:32 course is the number of questions. clicker questions. Some are just

27:37 That don't require cooker. Just require quicker in your brain. Okay,

27:44 here's the first one. Basic metabolism question. Okay, so the false

27:55 is what to read through those. think, you know, if you

28:02 remember my intro bio days or I to teach that. So you

28:07 you didn't get some of Campbell's? mean Intra Bile one, I

28:14 Mhm. Not sure how much. how, how thorough it was.

28:28 even, Yeah. Mm hmm. . Okay, let's uh put the

29:17 on. Mhm, mm hmm. . Okay, toss it to in

29:46 we have any last minute to to um Alright. And one good.

30:03 , nice. It is. G are true statements. Um okay.

30:14 hmm. Again, all the questions gonna see like always will be posted

30:19 . The answers. So don't worry frantically writing these things down.

30:24 Um, so one of the concepts that we really want to zero in

30:32 . It's actually D. D as dog. You would have done it

30:36 morning. Your body sees this as source of electrons. Okay, so

30:44 can put that in your head. right, hold on to that for

30:47 while. All right. Whatever you and see what your favorite food in

30:50 . Okay. Um you do have reactions occurring your body, you know

30:56 if you over you deserve yourself. you feel sore muscles right there.

31:02 as a result of fermentation? Mm . Um So along with D.

31:09 . As in dog. Also B in boy. Okay. Um those

31:14 concepts really doesn't look that concept, I'll make it one very shortly.

31:19 , So generally the food you eat ultimately become oxidized by the cells of

31:23 body. Okay, So this term . We're gonna see a lot of

31:29 . Okay. Um oxidation reduction. the role of http. Okay.

31:41 uh this. Okay. It can it can be used to provide energy

31:48 energy is required. Alright. So of the main themes here is and

31:55 just relate to the T. Formation or hydraulic assist, but is

32:00 idea of And we see it a of times already, um coupling and

32:06 releasing process with an energy requirement We saw earlier in the context of

32:14 i on gravy, right? We a proton that we use that um

32:20 help drive another process and energetic Okay, So this is the current

32:26 enviro energetic six. That's how it's life works. Right? It's a

32:32 of these processes together. Okay, um I'm gonna go through let's go

32:39 to kind of first part here. . So we have our it's called

32:46 guy microbe I guess. Okay. so um as a microbe of course

32:53 and multiplies as we've seen, Um This represents to get this amount

33:01 biomass right? All the total amount living material, right? Went from

33:08 cell to bazillions of cells, represents a lot of energy occur,

33:14 ? Um a lot of heat given and this is going on.

33:18 He's always a byproduct of these thermodynamic that we'll be talking about.

33:24 Um But he itself okay that you generate from the acquisition of nutrients,

33:34 ? Breaking down nutrients. So chemical right? For life flow, harnessing

33:43 in that load. Blood explosions, ? Doesn't work all right. Because

33:50 you know for the most part exists ambient conditions, moderate conditions,

33:56 Um And so harnessing energy from a explosion for example. Although to be

34:04 , energy a lot of us can wasted like and of course, you

34:08 , life can can operate under those . So you might wonder why why

34:13 why is there so many biochemical reactions you just go from this to that

34:18 from glucose to see CO two and picks. It seems like the Brazilian

34:22 . It's because you can't take glucose blow it up all at once.

34:27 get all the energy from like something that picture show, right? You

34:31 it in steps in increments, You slowly break it down. That's

34:38 slowly but do it in steps stages . At different points, you harness

34:43 energy. Okay. And we'll elaborate we go through. Okay. But

34:49 one of these um things that keep hammering you over the head with,

34:54 this the Auditorium Federico thing? So is from what you see

35:00 this guy, it was it's getting complex types of things like we

35:11 right? The fake acids, proteins, carbs, you will find

35:15 all those four of those in meat or in in uh in plant products

35:22 well. So, but certainly they're . It's not C. 02.

35:27 ? So, and in 13 we uh metabolism wise, we really didn't

35:32 hair, a profit activity metabolism of these more complex organic materials.

35:38 that's kinda what we're gonna do in and 14 we get into um uh

35:45 of how redox reactions work and then the little troves and photo troves.

35:51 those guys, Okay. Um and we look at the kind of catastrophic

36:00 um again, in the realm of tropes. Organa tropes, right?

36:05 a breakdown of these more complex Okay. And you know, we

36:12 , yeah, this is what this what we're eating is how we're getting

36:15 from this. Yeah. What is ? Where's the energy come from?

36:20 the molecule you get here's glucose Where is the energy coming from?

36:29 we know it's coming for americans, know, we got all the

36:39 Well, no, I mean if go to the molecule itself, you're

36:43 this resort to what which are what those things bonds. Right,

36:51 So bonds breaking bonds. Right. and what makes up the bond?

36:57 do you do? Well, but and the electrons electrons make up

37:02 bonds. So, if energy that where the energy resides in molecules,

37:07 how do we harness that? So, it becomes an issue of

37:12 reactions, Right. That's, you , oxidation reduction. And so I

37:16 observations. Um okay, reduced molecules electrons, right? Because oxidized you

37:26 them up. Right. Um and your food sources stuff for And you

37:34 mention the question of what you waiting lunch today. Alright. Those food

37:38 are going to be ultimately be oxidized we've broken down, right?

37:42 you know, that's that's a digestive breaking out of a lot of food

37:45 smaller but ultimately goes to molecules And molecules those go on to your cells

37:51 then we'll do the oxidation. And so, in the in

37:57 stripping electrons from right at different Okay, so electrons are energy capture

38:03 electrons because everybody knows they're in they're do something with that. Okay,

38:09 , yeah, so, we're breaking this complex forms, We can do

38:13 in different ways as we'll see. reparation fermentation. Okay. And both

38:21 to a reduction in size of the ? It's just that fermentation uh doesn't

38:30 all the way. Okay. What called incomplete oxidation? Okay. Because

38:36 could go further. All right. go beyond slomo can go beyond

38:44 Okay. There's still energy left in molecules. Alright. How do I

38:51 that? Because within all the I drawn the chemical structure before the chemical

38:58 . But you know that you know the seas are bonds and the ages

39:03 cds or bonds. Right? So chemical Angela. Okay, you can

39:07 that down further and there's bacteria that grow. So so these fermentation are

39:15 , incomplete occupations that don't use Right? Respiration on the other hand

39:22 is does use oxygen. But there's so many areas of reparation is

39:29 be all about oxygen. Okay. that's how we respond. Right?

39:35 there are probably more bacteria that can other things. Other options.

39:40 anaerobic respiration. Exactly. So you fermentation you can have an aerobic

39:46 You can have aerobic respiration. And so um With the restoration of

39:54 we can go further. Right 0. 2 and water you can't

39:57 anything. There's no life form that that can break down c.

40:03 2. Cf is very stable. um you can fix here too.

40:09 . But that's using it as a block to make make more contact with

40:14 . Okay so um so so you're to see what your water that's

40:20 I'm not gonna go beyond that. , so that that is a complete

40:24 . That's what respiration is and do . So because it is that way

40:29 can you can harvest more energy from molecules because you are going all the

40:35 to see you too and water. so we'll see that there are steps

40:39 the way where you fall a tps . Okay. There's other steps.

40:45 more steps when you form these, this guy in A. D.

40:51 . These these are are electron Right? So it's all about observations

40:57 reductions and you're releasing electrons and certain . You've got to have something

41:03 The captain the care of the Okay. And that's where N

41:07 T. H in particular in D. Is the form it becomes

41:12 seen the electron th but if D. H also participates to a

41:17 degree but you can accumulate certainly any along the way as we go through

41:24 process. Okay, now, what is it doesn't stay although these are

41:31 carrying molecules, right carrying electrons that energy that in itself does nothing for

41:37 . Okay. Because you do still have to convert these into that a

41:44 . Exactly. And it does Right. Those, those ultimately proves

41:49 lot of HTTPS by a mechanism will look at here in a second.

41:54 , so um you know in a theoretical yield on paper With this mechanism

42:03 38 80 p promote glucose oxidized. , over here, two Fermentation to

42:20 . Do you think it's better? fermentation? Yes. Criminal acts of

42:28 fermentation, we'll never get you the amount of biomass as aerobic respiration.

42:34 . Or even random of respiration. , so and so that the I

42:41 , don't worry about writing the number . You'll see it again. But

42:47 electron transport system. Okay, so that's how that's the big that's really

42:55 whole crux of this thing is right respiration electronic transport system. So uh

43:03 that's what so many D H F . D. H. To feed

43:08 feed that system of electrons. And then uh then ultimately they are

43:14 on to a terminal accepted. And so if it's aerobic, it's

43:20 , right? It's anaerobic respiration. something other than oxygen. Okay,

43:26 . Um for the iron in some it could be, but nitrates very

43:31 uh as a terminal accepted for anaerobic . And um you actually haven't heard

43:38 lot about the desperation because what you and prior to this course is all

43:42 steroid restoration. Okay. But those require inherently, I think probably outnumbers

43:50 that inspire area. So economic activity is huge on this planet. You

43:55 think so, but it is whether fermentation or respiration and aerobically it's it's

44:00 big fight. Okay, so um , although uh so honestly, uh

44:09 information gives you the highest level of . T. P. S.

44:13 but nitrate respiration is not that far in terms of yield. Okay.

44:18 It has to do with just with nature of the molecules 02 is a

44:23 um strong oxidizing agents. Okay. and so it's it's has the ability

44:32 compute an oxidizing agent. A strong agents becomes good news. It's with

44:40 electron grabber. Okay. A little so than nitrogen. And then and

44:48 powerful electronic grab grab ability equates to energy. Okay. As we'll

44:55 All right so um so having um I heard a second. Alright um

45:05 you know I remember reformation can occur and Arabic okay. Using the same

45:11 same process of electron transport chain and carriers and blah blah blah.

45:17 Um now in terms of what it like fermentation reparation two totally different fermentation

45:26 actually much less complicated. That doesn't all components. You're gonna see

45:31 Okay. Very simple by comparison. . Um photo hetero trump. So

45:41 operators I mentioned before the upper part that term is right They can use

45:47 to generate energy. Okay but they fix co two Okay they have to

45:53 down uh by these pathways you see . Okay And so um as mentioned

46:03 previous diagram obviously you know always used an example for reparation even for

46:12 Right but obviously a many other things be used. Organic compounds can be

46:19 besides that. So, we're not focus on really in 13.

46:24 That's more 14. Um but mentioned because we're talking about different metabolic types

46:30 you're already aware of this anyway, Chapter four We talked about previously.

46:35 little tropes um these are chemo autotrophs there. So they fixed seo to

46:41 using organic forms of energy. Break down and use the energy to fix

46:46 02. And of course, for water troughs, you know, those

46:50 plants, etcetera. Check. we'll leave this for another week

46:56 So let's go back to here and at this question. Okay,

47:01 uh respiration. Okay, so respiration not require what? Okay,

47:16 let's see how you do on this . Okay, think about it.

47:32 . Okay, mm hmm. thank you. Okay. Mhm.

48:20 , whatever. Okay, paused it a second. I think 222 is

48:32 count. All right, here we . Mhm, rip her off.

48:42 right, boop. Yeah, all required. All are required.

48:51 especially important is that Member member There you go. Yeah. Already

48:59 a gradient. You need to have sides to create a gradient. So

49:04 is critical for that um among other . So, let's uh so this

49:12 kind of just a basic scheme for . Okay. And what's needed.

49:21 , uh The first part of 14 focus more on really on the mechanics

49:27 this, but I like to bring up right after that. She used

49:31 seeing it and have a waste of we're talking about. Okay,

49:36 um So the A. T. . Making machine if you will.

49:40 right. There's a T. Synthesis right here. Okay. Um

49:47 going to make our HTTPS. Now fuels is if you use it.

49:51 , I'm gonna try to take this . I'm gonna go. Guitar teachers

49:55 kind of mix it up. So time I'm gonna go kind of

49:58 All right. So eight ep is GDP making act creatively. Well,

50:05 . Um I just mentioned right 30 respiration theoretical yield. Alright. So

50:12 fueling that thing? Right. what's fueling is protons going down the

50:17 ? Right? So here we go make a tps take center.

50:24 Well, what's right there come Well, in this case it's protons

50:27 down to grazing. Just remember when go down the drain and release

50:31 Okay, So that proton gradient has . Now we're continuing to go back

50:39 this direction. Okay, So we this Protonix radio right? High out

50:44 , Low inside. Right? So keep stuffing those protons outside.

50:50 I'm gonna create a high level of energy. Right? That energy is

50:55 when those proteins. Protons come back the green, which is all gladly

50:59 . Right? Diffused down there, to give them a conduit. The

51:03 is a decent place by living by is not to allow the minutes to

51:08 hydrophobic. Right? With those charged . So, um now the other

51:16 you have and don't worry so much about this. But you also have

51:21 this is true for most sells a interior, negatively charged on the

51:27 All right. So you have really forces. You have charge attraction,

51:32 ? Positive charge like negative charge. . And you have the force of

51:42 . So you have to force is what we call the proton motive force

51:47 or what can bring in programs And , when they come in energy release

51:54 that's what contributes to the A P synthesis. Okay, so keep

51:59 backwards. Okay. So what what the proton grading? And we've maintained

52:04 . Right. Because we saw before the proton pump scenario that we're giving

52:10 Tps away. Alright. Hide relies the tPS to produce the greatest

52:16 But you don't see that here. don't see that anywhere in here where

52:22 doing this. All right http to plus phosphate. Okay. You don't

52:29 that because that this this this produces that we saw earlier can generate but

52:36 not sleeping at. Okay, So energy is coming from the flow of

52:42 . Okay, get that out of . It's coming from this.

52:50 um electronic energy. Right? And a number of components inside that electron

52:56 box. Alright that are alternately picking electrons and right hand pick up.

53:04 , you know. Right? And each of those steps is an energy

53:08 . Okay. And that energy releases to protons being pumped out. So

53:15 where the energy is coming from. not coming from spending 80 pieces coming

53:19 electronic transfer. Okay. So um then keep going, going back to

53:27 front of this diagram then to the . Um if you have a electron

53:34 chain and it's dependent and maintained in is dependent on electronic coming in their

53:44 to be transferred right then you gotta something a source fueling that thing

53:53 Like a steam engine that you're shoveling and it right to make the engineer

53:59 ? You have to have something funding shoveling electrons. Right? What?

54:05 that's what this is. Right, there. That's the source.

54:12 um what could be, what could that What could be What do you

54:20 for lunch today? What? So is a hey, is your

54:28 Okay. Sounds great. But I a for lunch salad. Alright.

54:35 of course the salad starts here. hearing broken down then finding to individual

54:41 which are actually what a is But could be any of the carbs and

54:46 proteins. Any of the take potential ultra potential uh energy sources.

54:55 , so um a molecule is are source molecules? Okay. Food source

55:03 now. Um Okay. The other thing here is it's one thing they

55:09 a source of electrons. Okay, a source of electrons shoveling electrons into

55:15 thing. And what's the what's the part? How is the shoveling part

55:20 ? Right. A. Is the the salad salad? Right. That's

55:25 to the individual molecules. Okay. keep saying the shoveling electrons in.

55:30 . What's the shoveling part that's going ? Transport? Yeah. But what

55:38 ? Just to show how do I to those electrons in the first place

55:40 even show them I have to take molecules and do something. Yeah,

55:48 oxidation reactions will will will allow electrons be pulled out and then given to

55:53 electron characters. Right? And the . H et cetera, those guys

55:57 to the whole right. So the and my example is kind of oxidation

56:04 and the character to the N A . Because A B H. And

56:08 those guys will go down and be ones to be the shovels and give

56:12 their electrons to the electron. So um so the thing was alluding

56:18 was flow electron flow. You have maintain that it's one thing to have

56:26 source that can show them in but have to have something that keeps them

56:32 right because that's the whole the only why the thing is even being

56:37 the proton grading. There's a constant of electrons. Right? Because he

56:42 electron transfers in our box there energy to the public proton. Okay.

56:49 we've got to maintain that that showing ended there. But also the

56:54 Right. And that's where the importance this comes in. What's sitting

57:01 Okay. Because that's what draws electrons it. Okay. Here we

57:08 Okay. So in terms of electron ability? Not a scientific term in

57:17 of electron on this electrons lover, would that be A or b mm

57:28 . Right. Because that's that. want the molecules the one that just

57:33 to suck on electrons and that's what is. Okay. That's what nitric

57:39 be with your anaerobic aspiring. And so having that there very strong

57:46 sector. Uh, we'll keep the going. So actually you arranged all

57:52 components in the in our in order uh strong donor of electrons to stronger

58:03 stronger except er, of electron the at the very end. The strongest

58:09 your opinion. The strongest don't have be weak. And that's how that's

58:14 slow keeps going. Okay? So B were eliminated then what happens?

58:25 a paper plastic bag over your head tied off. It's the same

58:30 The same thing will happen. All . You're restricting oxygen. Right?

58:36 means you're cutting me off. That electrons don't flow anymore. That means

58:41 gonna run out of your production no flow. No group proton gradient.

58:46 https. You dead in eight That's that's all because you couldn't maintain

58:54 proton gradient, Jack. That's how all ties together. All right,

59:01 keep breathing is my advice. Um keep maintain your proton radiant.

59:10 that's that's what I said. The stuff you eat is ultimately your

59:15 in your case your mitochondria yourself look that as oh, here come the

59:20 eventually. Okay, so again, to maintain. And again, this

59:29 , it's the same whether it's whether is something. Well, I'm going

59:34 say that I got a couple of coming up. See see how we

59:37 . So yeah, maintain proton maintains a teepee production. How what

59:42 we need? We just went over . Right. And of course that

59:46 be the last time I mentioned all stuff. What kind of throwing all

59:49 there and seeing what sticks and then pick up the pieces and stick,

59:55 it at you again. Okay, redox reactions is what it's all

60:01 Okay, so, again, this here, a couple of energy required

60:06 . We see it in the Right? proton radiation. Right.

60:11 you release it http production energy Put it together, electronic transfers energy

60:21 , couple it with proton pumping. ? Again, putting these two processes

60:26 . Okay, so let's look at question. Okay, um, we

60:34 inside e coli if this were e , I'm sorry for an aerobically

60:43 Which location would easily indicate slash show to us. One. I circled

60:50 . 1, 2, 3, 45. Exactly. 1,

61:00 3, 45. Um So, diagram, same, everything just asking

61:07 question today. Timers on. And the stragglers jumping. All

62:03 32 And yes, it's gonna be . Alright, location three. This

62:11 where? Alright. Terminal acceptance. , let's I'll come back to

62:20 Let's look. Let's look at um yeah, here's the question. Here's

62:25 next one. Okay. If this a little trophy, what what would

62:34 you that? Would you look your trough now? Mhm. What would

62:43 what would tell you what location would you that? Hey, yourself.

63:24 remember you think a little trophy Mhm. Think elves. What you

63:35 words you put together to define? trophy. Okay. Yeah. All

63:41 . Let's uh let's see what we here. Yes, it is.

63:50 one? Okay. Hold my breath that one. Right? So it

63:54 be organic? Why? It's right . Organic, Right? Organics.

64:03 hmm. Yeah, real big. aerobic. Okay, so the

64:13 what's the source? Is it organic is it something organic? And that's

64:17 versus hetero trope plan. Okay. Okay, let's all right.

64:25 I'm gonna go kind of piecemeal piecemeal through this, right? The

64:31 components. Right? So here's the member, Right? So I mentioned

64:35 how that's important in terms of creating sides, if you will.

64:38 So we're gonna stuff we're gonna make gradient. You kind of have to

64:43 some division where you can put yourself one side and less on the

64:46 Right? So, also, of , the cell membrane can be folded

64:51 , create a lot more, a more surface area. You can stuff

64:54 full of these enzymes involved in If you're if you're a photo

65:01 you can stuff it full of the pigments and things. So membranes are

65:06 for that reason. Okay, so electron transport chain then a source feeding

65:11 , right, We're gonna have electron that's going to be in a reduced

65:16 that will become oxidized. Right? up electrons again the organic division.

65:27 but the the source molecule, whether glucose or whatever, is not the

65:34 molecule that interacts with the electron transport . Okay. Even though it's a

65:39 of electrons, it's it's these intermediaries a baby carriers. These are the

65:44 that actually interact with transport chain. , yeah, the alternately alternately become

65:53 and then ultimately oxidized. They already up electrons to the front transport.

65:58 that. And so, as this uh electron transport chain will have

66:04 organized in a way so that you strong donors or electrons upfront stronger except

66:10 as we go to the end. . In your terminal accepted becomes is

66:17 an oxidized form. Right? Which think of it as electron poor,

66:22 picks up electrons becomes reduced. To be aerobic or anaerobic. Um

66:29 the process becomes reduced. Right? I know it's kind of counterintuitive,

66:33 go molecules molecules becoming reduced must becoming . Right? Well, no,

66:37 actually gaining electrons. So um and what happened. So again, this

66:44 transfer processes coupled to energy release from is a couple to pumping protons.

66:50 . And then the force the combination the diffusion of protons downgraded plus the

66:58 things. Okay, charge attraction, insight, attracting protons. And so

67:06 again, of course that leads ultimately the production of a Tps as energy

67:12 going down the gradient uh is coupled a T. P. Production.

67:17 , now and again, all important the flow. Right, electron flow

67:23 important, maintain up slow. so having a source feeding it having

67:27 except er accepting those electrons. And um and the other thing is

67:38 happened in here. Okay, uh . So what you see on the

67:43 , the other thing that we can to this is um the if it's

67:49 photograph, light Thanks. Thanks. can be the driver that induces the

68:00 redox reactions really as well. See is kind of the driving force to

68:05 about the redox reactions but in in auto trophy. You still have electron

68:11 . Right? What's the electronic source planting here on the way.

68:24 Water electronic source. Plants Um CO2 the is the carbon source for the

68:32 check. Um Okay. So I'm gonna go hardcore here on on all

68:42 firms here, but it's obviously important know. We're talking about bio energetic

68:48 um the Right. So we can can look at all kinds of

68:55 Um You can look at individual chemical , you can look at a collection

69:02 metabolic pathways, you can look at single cell, you can look at

69:07 population, you can look at an , you can look at uh the

69:14 if you wanted to in terms of energy changes, People do that.

69:20 . Um And so uh the delta term is one that we typically refer

69:26 as the useful energy. Something you do, right, whether it's moving

69:31 the gel um or muscles what have . Okay, Delta G. And

69:36 associated with these changes is always uh ask the entropy term, right?

69:42 measure of disorder or order. It a lot of energy to maintain

69:48 Like these bodies. We have our ordered in terms of molecules and and

69:53 putting together of components and things takes lot of energy. And we know

69:57 because if we we we fuel our on a constant basis, right?

70:03 only um maintain a body temp is lot of heat produced and that's why

70:08 why we are in those arms. ? We have I'm a tablet with

70:13 heat and that's what controls your But um but you know, use

70:20 energy also to maintain this disorder. life does right? Of course when

70:26 die. And it kind of more and kind of go to what into

70:31 and the ether into, you the dirt into the air everywhere.

70:35 ? Of course. Then uh interviews . So anyway, so it's extra

70:41 undergone. Right? Negative, focused so negative delta G process or those

70:48 release energy. Okay, positive energy require energy. Right? So think

70:54 these as cattle bolic, negative Yeah, positive. Right? So

71:01 one of the things to realize as is when you when you do these

71:08 of bio energetic six analysis. And again, you can you can

71:14 can define it in different ways and just mentioned can be a single

71:17 It could be an ecosystem. measuring energy changes. Okay. And

71:23 we were talking referred to as open closed systems. Okay. And the

71:29 and surroundings, Right. Candidate for exchange with the surroundings. Okay.

71:34 , you know, obviously not just all sort of chemists, you

71:38 and so they chemists aren't biologists uh the sense that there are, you

71:42 , chemists typically are looking at closed , right, biologists looking at open

71:47 , right? That's what life is systems. And so here's just a

71:52 simple example here. So we have chemical reaction could be a metabolic reaction

71:56 plus B. Two C plus Reacting some products and so in a

72:02 system just figure the test tube with cork on it. Right, closed

72:06 . Right. And so if we reactions to that to our system and

72:14 put the cork on it. And then just proceed to watch the

72:18 . The reaction will get to what begins with e equilibrium. Right direction

72:25 come at some point the equilibrium. . And then after that point there

72:29 really no net change going on. ? It's an equilibrium. All

72:33 But you know, life being an system can exchange with the environment.

72:39 ? So we can keep supplying, know keep supplying the actions,

72:45 We can use often very often the products are can be used for other

72:52 processes. Okay? Or it's just so like so like so to water

72:56 breathe off C. 02. We've taken air oxygen. So we're

73:01 systems. We exchanged the environment But what happens if if I come

73:09 equilibrium? What has happened to I'm taking a dirt nap.

73:17 Um So I close to equilibrium than are. Okay. So hopefully I

73:24 get there too soon. Alright, when you come to equilibrium, you're

73:28 dead. Okay. Not basically you . Okay. Ah So uh So

73:35 the thing about life but we can take new food and nutrients and we

73:40 it and then we give off stuff other things feed other metabolic pathways and

73:46 on and so forth. Right? we're always we're approaching equilibrium but never

73:51 getting there. Right. That's that's we're trying to do here.

73:55 Like I said, when you do the equilibrium, it's lights out.

74:00 , So um productive. So there's couple of things about those 2G that

74:07 manipulable. Okay. In other words can you can enhance it.

74:13 Maybe it's a process. It's a delta G. But it can swing

74:17 a negative delta G. Uh Something's when I think that can occur is

74:24 a reaction. So we call additive . Right, So here we have

74:30 glucose, right? Plus phosphate, , six phosphate. This reaction

74:37 that is an uphill you see the in energy has an uphill reaction.

74:44 takes its name is a positive delta reaction. Right? Plus 13.8 killer

74:50 promote standard of units for uh delta . And so how can we make

74:57 go? It's an inherently anabolic process energy where they're gonna come from.

75:03 , we can couple it with a hydraulic sis because that's energy releasing

75:10 So we can combine these two. . And when we do it just

75:15 basically add up the the energy Right? So to hybridize a

75:23 it's a negative A little over 30 jules from also you combine them with

75:28 net result is negative. Well then it is then it's a process that

75:35 can go, okay, so this all the time in metabolism, combining

75:39 a teepee, hydrogen or other molecules to help fuel the process as

75:47 Just have to be chemical reactions per . You can be concentration gradients as

75:51 seen store. There's different forms of energy potential energy that when they go

75:57 their gradient, they can release energy couple that to something else to

76:01 Energy requiring process. You can manipulate are reacting to products. Okay,

76:09 uh if you can have a high of reactant. So we see here

76:15 this equation, right, if we manipulate reacting to some products, may

76:22 able to influence the Delta G Make it negative more negative or from

76:29 positive to negative. Right? By reaction concentrations or products. We can

76:35 can either um I have an excess reactors over products or we can also

76:43 it by just taking away products as form right? Which happens all the

76:47 in the taliban is um We have reaction. They're all linked, many

76:51 them are linked together products of one of another. So you can take

76:55 the product as soon as it's you can maintain a high ratio there

77:00 reactions to products and that can drive G to be more negative.

77:06 another way to to manipulate that to make the process go okay. Um

77:16 I threw a lot at you. , So my suggestion is kind of

77:19 this over. Okay. Look, to the recorded lectures all right over

77:23 weekend, if you have nothing better do, okay? And uh,

77:28 come back monday, alright? Or ? Sorry, Tuesday. Thanks,

5999:59

-
+