© Distribution of this video is restricted by its owner
Transcript ×
Auto highlight
Font-size
00:00 green time. This is messed Mhm. Okay, thank God.

01:03 . Okay folks, uh let's get here. Let's see. So Um

01:11 are continuing with Chapter six today. So we're back kind of to to

01:19 routine of blackboard quiz um every week at least a couple of weeks.

01:26 me turn this up. Okay, what else? Smart work due next

01:34 today we finish part one and then into part two, which is the

01:40 cycles of viruses and then 13 part on thursday, we'll we'll get to

01:48 , we'll get to at least the of that. And so that's kind

01:50 one of those flip things. That be a bunch of questions. So

01:55 , 13 and 14 is our track metabolism which can make some people running

02:03 the doors, pulling their hair out I don't give the four level biochemistry

02:12 um uh presentation of it. because as you start looking through

02:19 if you haven't already likely haven't, when you do um you know,

02:25 you know metabolism, if you recall bio one, okay, the bunches

02:31 pathways and this and that. Um a way I do it that you

02:36 I don't expect you to memorize every reaction every enzyme. That's just

02:40 Um So but again, so I my point is don't be scared of

02:45 when you start looking through it. you're if you're kind of already kind

02:48 nervous about metabolism and that's all it's about chemistry and organic chemistry and blah

02:54 blah. So I hopefully presented in way that is uh not, not

03:03 okay. Help help us to say . Alright, so anyway, um

03:09 about that. We'll start on We're starting that likely the half the

03:13 half of thursday. So anyway, , uh what else? So we

03:19 uh exam uh this last week. I meant to bring the stats,

03:25 they'll be posted on black borders, folder called exam distribution or something like

03:31 . Anyway, the average was like 69 69.11. Okay. Um So

03:41 about, you know, I get exams range between 68 72 typically plus

03:48 minus. Okay, so that's pretty within range. I'm not one of

03:54 that says, oh, Design an so hard that the highest grades of

03:59 or something, I think. I think you learn anything from that.

04:02 , but there are those that like do that. Um um but not

04:07 . So. Okay. Uh so syllabus, it tells you in there

04:17 exams aren't curved, but final grades be curved. Okay, so final

04:22 can be curved. Um And I , I want question I typically get

04:29 , so is exam to the hardest the for exams? Um It's not

04:38 . The way to answer is I'm making the exam to be hard.

04:43 the nature of the material that can difficult for some. So yeah,

04:46 gonna be heavy metabolism stuff, but mean I've seen everything. There's people

04:50 don't do well in exam one do on exam to do great in exam

04:54 great an exam too. So it it's very there's really no pattern to

04:58 . So um yeah, if you a little bit of background already in

05:04 , organic um it could help. mean it's not going to if you

05:09 had that, don't worry about Okay. That's really the point.

05:12 I'll like I said, I'm going present it to you in a way

05:14 it's going to be as least painful possible. Okay. Um And the

05:20 question. So the exam will be on casa for a brief window a

05:26 of days this week. So that be likely thursday and friday. Um

05:32 mentioned in my email I sent these out twice a week so I'll mention

05:36 there but it will be available for to view on casa for a brief

05:41 . So do look at it. anything, I look at it just

05:43 make sure there's no blatant mistakes, could be just a question that I

05:47 completely whatever. So even for that you just look at it.

05:51 But certainly look there and there is answer key. Right because it's a

05:55 of my own questions and everybody gets a collection of these and so I

06:00 to have 390 answer keys. So look through, you know obviously

06:05 know which ones you missed. Focus on those. You've already eliminated

06:09 answer. So see among the three . If you can figure it

06:12 obviously we have questions, let me . Okay. I would say have

06:18 this point. Have a whether you well not so well in the middle

06:24 amnesia. Okay. And so your now is exam two. Okay.

06:32 and and put all your efforts into . Don't waste time worrying about what

06:37 on exam one. Okay. Um I would say okay to do this

06:46 the definition of insanity, they bring what the definition of insanity is doing

06:51 same thing again. Alright. So you did what you did studying for

06:55 , and then it gave you a right? I don't think you want

07:02 do the same thing again. Not not to be funny, but

07:07 mean, I don't I don't think want to do that. Okay.

07:10 guaranteed guaranteed you will get the great again or worse. Okay.

07:18 do something different. Because what do got to lose? Right. We

07:22 do well, the first time. case scenario, you just make the

07:27 radio, but you can only be right? So change it up whatever

07:32 did. Okay. Um You didn't ? Right? Bottom, did

07:39 Mhm. No. Okay. All . So um So yeah, change

07:45 up. Right. If you're in what to do. Look at day

07:50 video lecture 8 23 22 I think called. Okay. There's like a

07:57 minute segment, maybe more than halfway and I go into how to

08:03 Okay, if you did well on exam or you you you're where you're

08:10 , then proceed. Okay. As know, as you have been doing

08:16 , maybe tweak a couple things. , so again, I'm here.

08:22 you have questions help, what Okay, so, the other thing

08:27 don't don't you know, don't don't in despair either. He didn't do

08:34 . Okay. Like I said, amnesia. Say I didn't do

08:38 effort, effort. I'll do better the exam to Okay, I'll show

08:44 . Okay. Um Alright, so , I'm here to help.

08:51 But again, don't despair. You'll overconfident. Okay. Um anyway,

08:57 think, you know what I So, you have any help

09:01 Just come see. Yeah. so, um let's get our heads

09:08 into back into science. Okay, , viruses. Right, So,

09:15 start with um just a little brief of what we've done to this

09:22 Okay, viruses, so, here's little basically a summary of look at

09:28 definition of the virus. Right. looked at the structure of virus variations

09:33 that kind of a generic viral replication and ended with kind of the classification

09:42 . Okay, so things to Right. Uh so remember the virus

09:49 virus prime thyroid cry on its own shelf. Okay, viruses, those

09:56 things are not viruses. Okay, may be virus like Okay, but

10:02 not viruses viral load. Is your nucleic acid RNA prions infectious proteins.

10:13 , so let's forget about those. now just focus on viruses viruses,

10:17 . They have a structure. The basic structure. Right, is a

10:22 coat capsule. Right? That surround genome genome can be multiple things,

10:27 ? D N A R A single of double stranded. Um the shape

10:31 the captain can be a filament this hypocritical. It can be a

10:37 20 sided shape. Okay, um can be um a symmetrical,

10:45 Okay, the naked and enveloped Right, So does have an

10:49 Doesn't not have an envelope. Um of course associated viral protein stuck

10:55 there. Right. The uh like protein spikes. The um these are

11:02 gonna be involved in recognition. And other functions. The And so

11:08 can use all these criteria to identify virus. Okay, um we typically

11:14 the genome type to classify um and kind of the route to get to

11:22 the transcript, Right? Because if look at the cycle again real

11:27 the you have to think of beginning end. There's one way to think

11:32 it right here, here and then , Right, or here. The

11:40 is infection ultimately the goal for that , if it's going to perpetuate itself

11:45 to make lots of viruses. So what has to happen between that

11:50 and then making all those viruses the we know, right? You got

11:53 make proteins right to make copies of . Right. So that's what's going

11:58 on in the middle here. now there's different variations, right?

12:03 kinds of variations will see on how happens. But ultimately whatever viral type

12:08 are this is has to at some be the endgame. Right? Make

12:12 of operatives and that's going to entail genome because all these guys like to

12:17 a genome in it and lots of because we're covering the thing and they

12:23 coat. Right, captured. um and of course because viruses can't

12:28 a lot of their own things, have to use the host to take

12:33 different parts to do this. ribosomes, t RNA nucleotides etcetera.

12:38 , now, where they can differ do they have their own memories?

12:42 they have their own memories that is by what kind of virus are

12:47 Are they D. N. A or the RNA virus? Right.

12:51 there's that RNA dependent RNA polymerase Right. We'll talk more about that

12:55 . So again. Um beginning and every virus is gonna do that recognize

13:03 get in then make lots of Right? The middle part is what

13:08 vary and we'll see some of those today. Okay, um and then

13:13 is what we ended with last time this classification scheme. So I realized

13:18 when you first see this, it's okay, so you kind of have

13:24 it's really remember two things. Remember is the plus. Um R.

13:32 . A. Okay. Is transcript can it can Rogers owns can plot

13:40 on it and begin producing proteins. , not the case from minus

13:46 Okay, minus has to be That's this is all about. Getting to

13:52 two at this point and the yellow ones are all the plus form.

13:57 . Getting to that point. because that's how it's going to make

14:03 proteins. Again, up here. , we're gonna do that. We're

14:10 make lots of viruses need to be to get to that point obviously.

14:13 , so becoming on the viral Right. They'll have different routes to

14:17 there. Okay, again, when we get to RNA viruses,

14:22 that's that's the one that's the most problematic for trying to grasp that.

14:29 so we'll visit that here in a bit. Okay, we'll go through

14:34 these RNA viruses do. Your group 345. Okay. And then the

14:40 is kind of its own thing. , um anyway, if you're still

14:46 of fuzzy on this. When we wait a few slides and I'll try

14:51 unbox it. Okay. But that's what it is. So remembering that

14:56 and what it's what its role Okay. But then also that in

15:01 for RNA viruses is remember that all protein bubbles are gonna have genomes stuffed

15:10 . You're gonna make lots of copies genome. So if you're an RNA

15:15 , if you're a plus, ultimately got to have some way to make

15:18 of RNA is your gene. That's your genome. Right? If you're

15:23 minus you gotta make lots of copies that. Okay. So that's how

15:27 can complicate things when you try to what's going on here. But I'll

15:31 to fix that when we get get there in a few slides.

15:36 But what it really boils back to concept here. This is what's coming

15:40 . Gonna make lots of viruses coming then. You gotta do this stuff

15:43 the middle. Okay. That's and they vary how they do that,

15:48 ? But what's varying is kind of going on in between. Okay.

15:53 may not be crystal clear yet, we'll get there. Okay. Any

15:58 at this point. Okay. present. Yes and no,

16:16 Because it depends on the viral That's me. I hope it's not

16:21 . You can keep answering questions when get to we get there.

16:26 so let's uh I know I there's slides that have to do with viral

16:32 . I'm still putting it off. think it's best just to wait until

16:34 very end because then we will have through bacterial viruses. Animal viruses I

16:39 probably make more sense. And once get just put at the very end

16:43 so that we'll get to that on . Anyway this table don't memorize this

16:50 . Okay. Um I just put in here just to kind of show

16:54 the groups. Okay. Representative types so the ones you're that a lot

17:00 human diseases are caused by it's really group, the RNA groups.

17:07 Um you can see here the minus group is uh rabies virus,

17:15 mumps, flu Ebola. Uh these hemorrhagic type viruses that are really

17:22 The plus our group includes uh those endemic here in this part of the

17:28 . West Nile endemic here and then Western Louisiana and eastern texas including Houston

17:39 , mosquito born, yellow fever. fever as well. Um If you've

17:44 in the airport recently may I think may have signs up coming from south

17:49 . You make these signs of dengue . Be aware of blah blah.

17:55 Also covid in here as well. and Plus RNA virus. So um

18:00 lots of things that we're familiar with a disease standpoint are in this RNA

18:05 . Okay. But certainly some that D. N. A. Uh

18:10 human papilloma virus among others. Herpes that causes the fever blisters and

18:16 Okay and then retroviruses and of course own unique group. The HIV is

18:23 one of the most familiar with. then this one is kind of an

18:28 group. So they have um N. A. Genome but they

18:37 . N. A. They don't the DNA template to make D.

18:41 . A. Like we do for . Okay they're templates used to make

18:47 . Then they have this particular type reverse reverse transcriptase that copies that back

18:52 D. N. A. Okay that's how they operate. So they

18:56 copy DNA to DNA and RNA. RNA back to DNA. So a

19:00 bit different. They called the pair retroviruses. The one really only one

19:05 stands out here in terms of human is the hepatitis hepatitis B, liver

19:12 disease. Um Okay so again this just for illustrative purposes and just to

19:21 out the different human disease types that that are found. So let's uh

19:27 at one last thing. Alright so viruses. So again Don't you don't

19:32 to familiarize with all the data that's on here. But that that large

19:37 um ensure your book even talked about but the relatively recent discovery maybe 10

19:44 or so ago. Um and so big we mean a micron or

19:50 Right so most viruses are gonna be the Micron size limit. Um 20-2020

19:58 too. Um 20.20 nanometers. 20 sized point oh two microns to about

20:10 micron range of most viruses? These guys that exceed that of course.

20:15 uh can have because they're larger have bigger genomes. Can even have remnants

20:23 like have some ribosomes have some RNA. So they can make some

20:29 of their uh well partially make some the peptides but they still rely on

20:35 host for for the other other R. N. A.

20:39 And things like that. But they they might represent likely some kind of

20:44 between what cell has lost someone's function speculating. Okay, but that's what

20:53 appears like. And so of course of even even rudimentary metabolism to a

21:01 , right? Don't don't think of as of course like a periodic

21:04 But again just represents you know that know, if anything life isn't all

21:10 in a nice neat boxes is always be things that are outliers to

21:16 Okay. And so it gets even when in this one down here,

21:21 uh called mama virus for some Okay um and this is there's even

21:29 virus that infects that virus were called viral fage. That's really strange.

21:37 ? So for that to be the virus affecting other virus. Well then

21:42 this this thing must have some host it needs that can only get from

21:50 particular host virus. So it can weird. Right, so this is

21:55 first instance of this I've seen. um any questions. Okay so again

22:02 of just the weird outlier group. many of these are things that infect

22:08 like protozoan allergy things like that. Which makes sense if you're a big

22:14 and you're likely going to infect a big set. Right, It's not

22:17 affect bacterial cells. Okay. So now transition into different life

22:26 We're gonna start first with bacterial Okay. And I think before we

22:36 any questions everybody the the host range trope is um rope is um is

22:48 to a bunch of different hosts or . Right. The type of cells

22:56 infect within one host trumpism is a host and a number of cells and

23:01 in that host host ranges. How how many different host types can the

23:07 infect? Think rabies. Okay so okay so again we've kind of gone

23:14 this already. So real quick. it's kind of a generic um viral

23:19 cycle. We're gonna we're gonna start viruses and going animal viruses. And

23:25 there's gonna be variations of each of steps. So we have just in

23:29 most basic going step wise we have recognition attachment. Of course that's where

23:35 begins and ends. So it's all the viral surface proteins. Host surface

23:43 . Okay um genome entry. Obviously the genome in let's make copies and

23:49 eventually transcribe translate and so um uh anything here entire. So, we'll

23:58 that in some cases the entire virus enter. In some cases it doesn't

24:03 rule, bacterial viruses do not enter cell only the genome does.

24:09 Um So this is an assembly. course, it's taking over the cell

24:13 make a factory virus producing factory. the term uh very in and virus

24:23 . Right. So one is not from the other from me. Um

24:32 there's different as there's many different ways a virus to enter a cell,

24:37 on the type. There's also different you can exit to sell.

24:41 And uh we'll see variations there Okay, so I think we are

24:49 , we have started with a Okay, so this is about

24:56 Okay. And their life cycle. lipstick based cycle means something specific.

25:06 , if you looked ahead, um little and then there's Okay then you

25:13 you say it out loud. Um said listen jenny, maybe she may

25:22 may not be right. Okay, you can point that's not part of

25:28 life cycle of electric bacterial virus. , pause for a second. All

26:28 , counting down 3 2 one. . Alright, um if you answered

26:40 You are correct. Okay, so the choices here are D.

26:52 In time. So uh let it . So like age in gold areas

26:59 the cell. Okay, Ultimately in viral infection, the host ultimately will

27:07 . Okay. Usually, but for , they pretty much stepped on the

27:13 pedal. That's there. They're playing right just to take over the

27:17 Making lots of stage and burst burst cell and get out and infect more

27:24 . Right? So that certainly uh is transcribed resulting of course a is

27:30 . Be typically analytic cycle. The is going to succumb quickly, especially

27:37 bacterial viruses. It happens fairly Uh Certainly many copies of asian they're

27:43 . That's making making genomes as a of any bio cycle. Okay.

27:49 are known as as um virulent virulent . Okay temperate or the lice

27:57 A genic types uh entire bacterial viruses a rule only gets in everything else

28:05 outside typically. Okay. Um and uh so with so we look at

28:12 bacterial virus cycle first because it is complicated because remember that they're infecting a

28:19 carry out cell less complication in terms versus you carry out cell and um

28:28 I mean the principles of the infection are going to be similar but there

28:33 some differences. And so the t the pages are kind of the class

28:37 our little page. Okay, so end game there is attached to get

28:43 genome in and this is where this the many or fate had this weird

28:49 of structure to them. Um They to capture with the genome. They

28:53 have this portion here called a I think these are tail fibers.

28:58 so the ends of these will be specific receptors on the cell surface.

29:03 then this actually compresses like a Okay. And so that pressure actually

29:09 what allows the genome to enter the the cytoplasm. Okay. And so

29:16 basically you have like uh empty protein , so to speak outside the

29:22 They call these um ghosts when they've their home. And they're just like

29:27 protein shell on the outside. They them ghosts for that reason. Uh

29:33 of course are aren't infectious at that because there was no genome into the

29:37 gotten inside the cell. Okay. listen, genic phase by less a

29:43 by contrast. So temperate means you of go to be kind of,

29:49 can change temperate, you can be one time and it can be mad

29:54 next time. Right? And so Alexa genic fade when it's food changes

29:59 being mad. All right, that the cell and breaks out.

30:03 so let's eugenic fage can go through cycles. Misogyny and lighting cycle.

30:10 both opponent. Okay. Um And look at that here in a

30:16 So integration in the chromosome. So something we'll see among different viral

30:22 bacterial and animal viruses, they that part of the cycle. Once they

30:28 the cell is genome goes to the and inserts itself. Okay. And

30:35 in that state. In with bacterial we call it misogyny or profane

30:43 Okay. In animal viruses we call a pro virus state. Okay,

30:48 both are very similar. It's a viral genome inserting the chromosome.

30:53 And in that state the host cell not negatively affected. It's just doing

31:00 thing right? It just has this of viral DNA insurgents chromosome is not

31:05 affecting its health. Okay. Um so but ultimately if the fate is

31:11 to produce lots of viruses, it's have to come out of that

31:15 Okay, so this is a little different type of strategy these guys have

31:20 to um lighting page. Okay, like I don't have that.

31:24 They in fact make viruses kill cell . Okay, that's all they

31:31 but less so ginny has other cycle there. Okay, so let's look

31:37 that. And so what determines whether stage stays in if it's one of

31:44 types stay in that mode of just genome in the in the chromosome or

31:51 ? All depends on environmental factors. . And so here I basically talk

31:59 both. Right. And so um whether you're little page or temperate

32:04 you're going to of course recognize your attached and then insert your genome.

32:11 , now if you're a lighted page only gonna go this far. Okay

32:17 um hold on, yep. Change . Sorry. Okay, testing

32:37 Okay, come on. There we . Alright so um if you let

32:42 fade you're just gonna be doing This right here. Okay so step one

32:51 up here a second. All right step one you see the genome outside

32:56 chromosome of course and then enzymes being proteins being produced proteins. Uh some

33:05 these involved degradation of the host So you see the this is the

33:09 chromosome. You don't see it And the following pictures because being basically

33:14 uh nucleotides being used by the virus to make its own genome copies.

33:20 so these viral bacterial viruses we're talking are all D. N. A

33:26 . Okay and D. N. . Is what's of course itself.

33:30 so the then of course it was by um synthesis of viral proteins,

33:38 of viral genomes assembly. Okay. final release. Right? So very

33:47 faith will have a list. So I'm they have with them and the

33:52 line breaks cell wall apart. And it will of course um burst the

33:57 because it could even be just the numbers viruses in the cell just completely

34:03 the cell because you can get a . So here 205 100 is a

34:07 . Okay Purcell. Okay so in I've seen like an E. Coli

34:14 right in a test tube it'll have cloudiness turbidity indicating lots of cells.

34:19 got a drop of of of age it And um within 30 minutes or

34:27 the liquid becomes like water and all material at the bottom of the tube

34:32 of course represents dead cells and parts dead cells at the bottom.

34:37 So it happens very quickly. Okay obviously these cells can go on and

34:42 other hosts and continue the cycle and very quickly they can obliterate a

34:51 Okay? Um now let's see. so again this is what you see

34:59 the screen here is all you're gonna in the light fade. Right your

35:04 genic fage. You have this as component plus this what you're about to

35:10 . Okay so here the genome of virus inserts into the chromosome. So

35:18 shows up as like a purple purple of the genome. That's right

35:24 Okay and basically as I said it's just unaffected hosting. Just divide and

35:30 as it normally would. And so course as it does that there's a

35:35 of the genome. Pro virus profane me, which one of the resulting

35:41 of subsequent generations? They all have copy of this of this pro

35:46 Okay, so basically building up the of cells from this point onward where

35:53 cell contains a copy of that profits fades genome. Okay and so um

36:01 can imagine you know it's like a time bomb. Right. And so

36:06 have to have the cue that says let's everybody get out of the state

36:10 let's start doing the lighting cycle, ? So it's not just one cell

36:15 it, it can be a million doing it right, if the population

36:18 at that point where it says let's to lighting cycle, okay, because

36:22 has to do that in order to know, make make new page,

36:27 , it's not making new page in cells, right? It's just along

36:31 genome is along for the ride in host genome. Okay, It's gonna

36:36 to do this life cycle in order make the actual viral particles right?

36:40 again each one of these cells are of doing that. Okay, so

36:46 all about the health of the Okay, so okay um before I

36:55 to my questions, any questions at point? Okay I think it's barely

37:02 but let's uh look at this Okay perfect, where's my question?

37:10 on, oh I forgot. Okay we got here's our it's going back

37:17 the cycle here. Okay, it's be a cue that tells it to

37:20 that. And so here's the question um would the presence of abundant nutrients

37:33 misogyny or promote the lighting cycle? is a clicker question, don't blurt

37:39 the answer yet, so with having ton of nutrients around you think that

37:48 that would maintain misogyny or promote let's to lighting cycle, Okay, okay

38:35 down from 10 mm All right, see what we got here? Only

38:53 50 yep. Okay. Alright um uh going to the lighting cycle.

39:10 know happy. Yeah. So why you say that? Yeah, so

39:14 said b it was your choice right . Why is that you're right on

39:36 on track. So gentleman said what's name? I'm sorry Emmanuel said is

39:45 . So he said that All this is a frame it this way

39:51 in abundant nutrients. Okay are you have lots of cells at that point

40:00 to less nutrients after four? We about growth. Right, so we

40:06 lots of nutrients. Right, that's promote lots of cell growth here.

40:11 and what does the virus need means cells. All right, so um

40:20 the promoting a leading cycle would likely the better strategy because greater likelihood that

40:30 will be able to perpetuate themselves. . So they promote someone, there's

40:34 of selves then and again remember that when this happens when they begin to

40:42 out and go into cycle not every they don't do it once in

40:48 It'll happen at a rate like most but nonetheless there will be um and

40:55 course they're gonna be aren't affected with I'm only focusing on those. Remember

41:00 our population of where these lambda are , you know not every single cell

41:06 infected but a good portion are okay but is everybody right, infected and

41:15 cells are growing right? There can lots of hosts around and that's the

41:18 to let's get out of this and because now they can be sure of

41:22 lots of hosts around to infect and can make more of themselves.

41:27 If it were starvation right then the goes well it's probably not a good

41:34 to induce the lighting cycle because we're gonna have anybody to infect. All

41:40 so um and we don't go into . But the the pro fage that's

41:47 the genome there are proteins that it's transcribing translating into and those proteins kind

41:57 gauge the the nutrient the health of cells so to speak. There's different

42:02 that that can be done monitoring maybe T. P A. D.

42:06 ratios is one way but there are to monitor that and that's what the

42:11 is doing. Kind of the sense state of the state of the health

42:14 the cells and kind of then adjusting on that. Okay. Does that

42:21 sense? And I think I'm crazy thinking it was crazy. Mhm.

42:28 . But that's the strategy but um questions. Okay. Yeah.

42:41 Well this this happens this happens in guts. So um immune response from

42:59 in terms of body. Well these are in our guts. We really

43:04 don't affect our health. They affect health of the bacteria affecting your gut

43:10 they kind of they kind of they a balance really of bacteria in our

43:15 . And so yeah. Yeah something that. Yeah. So certainly after

43:20 had a meal um that's when the cycle is actively going on. Many

43:27 in your gut because you just eat lot of food and that's of course

43:31 they rely on. And I think they've done studies where they've seen the

43:37 of fage output from this when it in like cycle in the gut and

43:42 see a correlation between the human We've eaten a meal. This is

43:46 active compared to in between meals it's life. So ginny. So so

43:52 play a part in this too. course. Yeah. Um Okay.

43:58 let's see. Alright so M. . So this is the so we've

44:04 in terms of bacterial page cycles. got three. Okay. Light cycle

44:12 . And this Okay so M. is a is a type that will

44:22 the cell. Okay. It does it does not N. O.

44:27 . Form form a profane so it integrate its genome. Okay. It

44:32 out in the cytoplasm. Okay and um in doing so it directs let

44:39 get this out. It directs the . Okay in this state. Okay

44:47 directs the synthesis of viral proteins. right so you go through the replication

44:53 right, copy genome. Um transcribe viral proteins using host components.

45:00 so here you see M 13 getting of the cell. So what you

45:05 is that the the host cell Is not dying. So, you

45:16 subsequent generations. Right. So here's M13 and and it produces viral progeny

45:23 a low rate. Okay. At low rate. So what it means

45:30 and so this uh this it was continuum in terms of bio production impact

45:37 the host. Very bad for the . Lots of virus produced. Of

45:43 , lighting cycle. Right. The cell will die. It can be

45:48 go to misogyny host cell is perfectly . No problems at all.

45:53 It could be like this. Because because the viral the M 13

46:01 is copying its genome and making It is taking resources away from the

46:08 . So, it's not like zero on the host. Of course there

46:11 impact. So, the impact is the host cell kind of grows

46:15 Okay. It's not optimal. Obviously got this parasite inside using it to

46:21 stuff. Okay. But for the itself it could be worse.

46:26 It could be this guy could be it so rapidly that it just kills

46:31 cell right? Like cycle. But not doing it is doing it at

46:33 low rate. Okay. So it's of and the cell can limp along

46:39 that kind of state. Okay, gonna see the same kind of thing

46:42 with animals animal viruses too. So so the question is so it's about

46:49 strategy versus what we saw was say lighting change. Okay so what House

46:56 . 13 Benefit compared to like a ? Okay you read you read you

47:02 to slide before I make we'll always you always has a host.

47:08 So you see it's uh it's just of coming out of the cell,

47:12 cell's intact so every generation there's always cells around. Okay um granted it's

47:19 gonna be growing at the same rate it's kind of limping along but nonetheless

47:23 have hosts and M. 13 is a thing that makes lots of viruses

47:27 a time anyway so it's kind of all in sync with each other to

47:31 . Okay so you know just a uh in terms of the viral life

47:37 here. Um Okay so the question that, yeah bacteria pages just a

47:47 excitable page and it runs out of to infect. Does it active or

47:53 it die? I think like any depends on it just becomes inactive becomes

48:02 of there now how long it can in that state and be infectious?

48:07 some varies. Um But generally the because you think okay life is affected

48:24 a lot of age then why aren't right, host evolves too? So

48:32 get changes in the receptors or whatever proteins are that the virus binds to

48:37 the virus can't infect as not at . It's gonna be back and

48:42 So it's at least from the viewpoint everybody. Right so yeah so good

48:53 . Um bacterial host defenses. Okay so common and we have this well

49:01 gene resistance Right? We just a occurs that slightly tweaks the protein or

49:08 the component on the surface is that virus binds to write changes slightly and

49:14 no longer combined. Well not at and makes it less infectious. Okay

49:23 bacteria and archaea are have these restriction and you're familiar familiarity with that is

49:32 when you if you've gone through the discussion of the common in Vienna and

49:38 engineering molecules. This is where you them because restriction enzymes that's what they

49:43 . They cut D. N. . Okay you know because of

49:51 But but you know their their use course in nature for the bacterium is

49:55 way to defend against viral infections. they're fiction nucleus would clear the viral

50:00 . N. A. Of course the life cycle. But bacteria are

50:05 so their DNA is of course protected they can modify too soon. Can

50:10 nucleotides. Okay so they can put groups methyl groups on say the

50:20 Okay and this is actually the restriction and so but host D.

50:26 A. Is protected okay for that because violent D. N.

50:31 Is not gonna be not gonna be . Okay so that's gonna be susceptible

50:34 the enzyme. So um now the recent discovery is this crisp or you

50:41 have heard about in your if not your own you've taken they teach us

50:46 genetics of course and some other But the crisper the context being likely

50:53 the the the fixing of human genes this system to fix mutated human genes

51:02 different types of genetic diseases. Okay that system of course is what was

51:08 in bacteria. So they call it quote bacterial immune system. Okay and

51:15 refer to it that way because as learn later this semester your immune system

51:21 a memory to it. Right? have your adaptive immune system which is

51:25 antibodies and cells involved in that have memory. Right? That's what vaccination

51:31 all about. Your vaccine. Your remembers that. So if you're infected

51:36 in the future that same antigen you very quickly. So it's the memory

51:42 . That's kind of the comparison Okay so um so crisper stands for

51:50 which I'm not going to I'm going say only once and then just say

51:54 after that clustered regularly. Inter spaced panoramic repeat. Okay way too

52:03 So what it basically is. Here's viral infection. Okay so again bacterial

52:10 fage infecting okay here is its genome into the cell and uh it can

52:19 this uh what's called a C. . S. Or cast protein.

52:24 I'm gonna flip to the next slide the same picture it just comes up

52:28 at a time. Okay. So our infection. Okay. And this

52:34 protein short for cascade protein because it in motion this cascade of events.

52:41 it binds to that viral genome and it cleaves it and takes out a

52:48 of it. Ok so um that so this is kind of where the

52:54 aspect comes in now. Okay. it's gonna hold on to that.

52:58 and think of it as a book it's gonna put it on the shelf

53:04 stay there. All right, so shelf is the genome. Okay.

53:07 so it collects these books if you or these memories of prior viral

53:14 Memories stored as segments of these previous infections, segments of the genome of

53:21 viruses. Okay. And it collects in this region called the CRISPR

53:26 Right so these are all segments of it will vary depending on how many

53:32 things been infected. Right? But are gonna be that's a viral infection

53:37 the past. That's another one. one. Another one. Um And

53:42 because they've taken a piece of the and put it in there as a

53:46 to remember it if it comes around . Okay so so um the so

53:56 it can do right it can then this region of D. N.

54:01 . Making a transcript right now we're have making copies of all these spacers

54:08 think of these memories of previous viral and then cleans them up into smaller

54:17 we called CRISPR RNA. Right here our cascade protein. It's involved in

54:25 and this then will look to see one of these segments. If this

54:31 infects say down the road again the virus. Okay will win these segments

54:40 up. Okay. Um and so will so presumably will it will bind

54:52 it doesn't actually it doesn't actually show binding this thing. Will this complex

54:56 bind to the viral genome and then binding brings about the cleavage the cleavage

55:04 the viral genome. Um Otherwise inactivated translation. Perhaps um one of one

55:11 both of those mechanisms will occur but you're shutting down the viral infection at

55:16 point. Okay so again it's it's collection of these spacers that represent represent

55:24 viral infections and so if one of matches for one that's currently affecting it

55:29 good to go rights protected. It be it won't be killed by or

55:34 . Okay um And so in terms effect on humans how how humans use

55:41 is of course we can engineer these and we can make these specific targets

55:48 human genes. Right and then there's editing function that allows you to to

55:54 repair the mistake. So genetic disease typically a a mutation and so if

56:02 can alter the switch back and make to the right then we fix the

56:09 . The gene was only fixed the disease so actively on that I

56:16 Oh there's anything in the pipeline in of this disease. There was a

56:21 that are maybe it's um cystic fibrosis think maybe. Anyway. So.

56:30 . And Okay. Uh So yeah very active area of research is working

56:36 these on human diseases. But origins are bacterial. Okay. Any

56:42 about that? Okay. Alright. Okay question. So we're gonna transition

56:50 into animal viruses. Okay, so take a look at this here.

56:58 type of life cycle an animal virus is mostly determined by what? Okay

57:07 think that will be an easy Let's see. So again as we

57:26 and viruses. So I'm gonna get little more complicated simply because we're now

57:31 with the eukaryotic cell and all of structures and so it's gonna be more

57:37 with ammo virus infections. As you'll . And again as I said probably

57:48 gonna be RNA viruses that may be are the ones that will cause the

57:53 problems. But again, just cigarette terms of what I mentioned before.

57:58 plus RNA and etcetera. Okay. right let's count down Shane. Yeah

58:15 gonna be genome form. Right? RNA or DNA uh it just

58:23 there's always gonna be outliers of both . Um But you'll see how the

58:29 type will influence kind of where it in the eukaryotic cell. Okay,

58:35 um All right. So we talked before about trumpism. So remember that's

58:42 virus is inside of you. What the potentially different cell types that can

58:48 ? Okay. And what they look ? And so uh you know,

58:52 a big deal. Right, recognize what's on the surface. And

58:57 for cold virus, it's this um called I cam uh These are on

59:04 respiratory cells helping adhering cells to each uh kind of what virus look

59:11 Each one has its own unique thing it looks for. Um the river

59:18 be broad or narrow we've mentioned Um And so the form of the

59:24 . Alright, DNA viruses utilize host machinery. Um Where is the DNA

59:30 most likely to go once in a compared to RNA virus? Where is

59:35 ? DNA virus likely to go nucleus why the nucleus? What specific part

59:47 the machinery? Well, I think one. So DNA virus has

59:53 n. a. Yes. Is be the nucleus. Right. So

59:59 that's remember uh cell cycle. So when your cells divide uh the

60:06 replication is the longest part of Right. It's all occurring in the

60:10 because that's where DNA polymerase is So DNA viruses that lack and they're

60:16 to the nucleus. Okay. For reason. Okay. Um and also

60:22 some issues for viruses. Um If virus is dependent on a if a

60:31 virus is one that has does not DNA polymerase and it goes to the

60:36 for that reason to use DNA polymerase copy its genome. Um It can

60:42 an issue if the cell is a , remember, your cells can be

60:47 different states. Growth states, It can be like what's it

60:52 G zero G zero state. They're kind of stuck in kind of

60:59 non growing state. Right? Made growing state that will impact kind of

61:08 state of the D. N. virus. Okay. Um well that's

61:12 example. We'll talk about the HPV is that way? Okay. RNA

61:18 remember this RNA dependent RNA polymerase, . D. R. P.

61:23 , so they typically stay in the effects. There's no need to go

61:29 nucleus. They don't need a DNA . They don't have the DNA

61:32 Okay, so they can pretty much their stuff outside the nucleus.

61:37 But um the uh the uh but differences, there's variations, right?

61:45 the flu virus is an RNA virus yet it does go to the nucleus

61:50 part of its life cycle. Ah there's other DNA viruses that uh

61:59 have to go to nucleus because they their own lee. And so there

62:02 gonna be some exceptions but the rule that DNA viruses typically go to

62:07 And if you don't you're kind of anomaly similarly with RNA viruses. Okay

62:13 um so remember that they are independent . So our R. N.

62:18 . S. Are not copied into RNA molecules. Right? Our

62:25 N. A. Is right, copy our DNA. And RNA.

62:28 part of the whole information flow of in ourselves. Um but we don't

62:37 our RNA. The RNA. We just make we just transcribe more

62:41 . Okay if we need more but they have a genome of RNA.

62:45 have to do it that way. so that's gonna be a viral

62:48 Okay of course retroviruses are their own that so RNA to DNA to RNA

62:55 protein. So they have their own transcriptase. Okay, so uh entry

63:03 the virus. So this is where can get vary from a bacterial

63:08 bacterial virus doesn't really have to deal this. Okay, because only the

63:12 goes in but with animal viruses they have different ways to get into the

63:17 . Right, so typical is to fuse with the cell membrane.

63:24 so enveloped viruses. Alright can do . Others can enter as a

63:30 Okay and so here is. And whatever the process is whether it's 12

63:37 three it's all called uncoated. it's uncoated getting genome free inside the

63:44 however it does it. Okay and the measles virus which is an RNA

63:50 . Um So of course they exploit on the cell surface. And in

63:57 case we're fusing right with the cell and then releasing the caps it into

64:04 genome which doesn't get digested by cell releasing the genome. Um So receptor

64:13 in those psychosis. So if you thinking bio one we talk about cholesterol

64:20 . And so cholesterol uptake occurs by process. But certainly viruses can exploit

64:25 same process. So binding again can vesicles formation in the ozone.

64:32 But then we'll fuse with lice ozone typical. And then the digestive organ

64:38 will break down the capsule and release genome. Okay, so then there's

64:47 encoding process occurring. So both of one and two here occurring at the

64:53 of the the outer the outer cytoplasmic . This last one is occurring at

64:59 nuclear membrane. So then the virus a is a herpes virus. It's

65:05 goes to the nucleus DNA virus that to the nucleus. Okay. And

65:08 the process occurs where you will form endo zone that then travels so the

65:14 virus is entering the cell goes to and that's where the encoding occurs.

65:19 so um so the uh all three depending on uh certainly the genome

65:30 Right, So DNA virus going this , these are both RNA viruses.

65:35 um now the assembly process so So remember in eukaryotic cells.

65:45 The endo plastic particular um uh the apparatus. These can often be involved

65:54 viral life cycles is where the virus of course to carry a protein

65:59 Um Using post components obviously the gold can involved as well to transport viral

66:07 to the surface as you see So an enveloped virus will do.

66:13 components can be synthesized and put in golgi and they go in vesicles to

66:18 surface fuse with the membrane. So now you see the little red

66:23 things are the viral proteins that have synthesized previously. And so this thing

66:30 it exits, it's this budding So this thing will basically wrap around

66:37 . Okay. And gains the envelope it exits. Okay, that's what

66:42 call budding. Sometimes. I think analogy term is shedding shedding virus I

66:48 is is also used the same Okay. And so the other point

66:54 is that this can happen, viral can occur at a low rate and

67:02 virus host cell can remain intact. cell can be put on maybe not

67:08 as fast as it would normally Certainly be healthy and viable. But

67:14 viruses are butting off at a low . Okay. Or shedding virus if

67:19 will. Okay, so um so again you'll see very you can ramp

67:29 viral production. Maybe make it occur faster and overwhelm the cell. Okay

67:35 even listening it in some cases all on the viral type. So um

67:43 , okay so these viruses again again rule of thumb as I just mentioned

67:49 can be types that don't always follow rules but for most viruses they follow

67:54 rules um RNA viruses will do their outside the nucleus. Most will they

68:01 there are variations for a few. and so in um looking at an

68:09 of DNA virus, the human papilloma um it's a also an S.

68:17 . D. As well. Can cause of course terrible cancer

68:22 young women and but there is a for it. Effective vaccine. Um

68:30 this is one of those as mentioned that's tied to uh the the cell

68:40 of this of its host. Okay these in fact um uh epithelial

68:46 Okay and um epithelial cells see the of basal cells are the undifferentiated

68:55 Okay the non replicating form. The original sites. So this could

69:02 a your skin for example carrot insights the full developed replicating form and we

69:10 know that we said tons of skin right every day we have a thick

69:14 of epithelial tissue comprising our skin. layers of tough topic gets left

69:21 Right and you have growth underneath. skin you know skin tissue represents cell

69:27 that are actively growing compared to other tissues in the body and so

69:33 Right? Depending on the state of host where it's at in this stage

69:38 behave differently. Okay. So it's also a type that can be a

69:45 . N. A virus. And viruses can be prone to type that

69:51 certain chromosome into the host genome. . And they are a type that

69:55 do that most likely to do that basal cells. Okay. Where it's

70:00 of just hanging out and not they kind of insert into the chromosome

70:04 insert in the part of the chromosome you know, is part of normal

70:10 . Uh Then that's where you can cancerous cell types. Right? Because

70:14 all know cancer cells are uncontrolled Right? So depending on where they

70:20 , that can be the case. . Um now the as basal cells

70:28 the original sites. Right. These then more actively replicating. Okay.

70:34 why why aren't why isn't the papilloma reproducing really in basal cells where as

70:46 Carolina sites they are. You see Syrians shedding lots of virus from Carolina

70:54 . So why are Carolina sites so in that HPV can actively be formed

71:00 exit but not in basal cells. is the component that's going to be

71:11 abundant in the original site than a cell that HPV would need no DNA

71:19 , it's more DNA polymerase an actively cell because it's copying its own

71:25 N. A. It's actually growing that's in the HPV grab them right

71:29 use it so in the basal so not really growing. No cell division

71:35 on very little and so unless not any comes around to use so hence

71:42 can replicate much more. So as cell differentiates into Carolina sites and more

71:47 growing cell cell form. Okay and um again here's the basics of HPV

71:57 representative of a DNA virus. Okay encoding occurring at the nucleus um using

72:05 RNA and DNA primaries. Okay are ready for transcription of course. Remember

72:12 transports have to go outside the nucleus translated on into plastic particular. Um

72:18 not shown here but you know the can certainly be involved in the process

72:23 um it's not uncommon also you see that you have translation of proteins occurring

72:29 as it has to be but then into the nucleus and assembly of particles

72:34 in the nucleus. Cause that's where genomes are being produced to insert them

72:39 the assembling particles, assembled particles. so yeah so it can be stuff

72:45 stuff happening outside and it comes back and then put it together. That's

72:50 for a DNA virus. Okay um questions so um that's a good place

73:01 stop start with RNA viruses next Okay thanks folks. Okay it's

73:41 Oh it'll be probably tomorrow. Yeah yeah Because the final end up being

74:07 around the 72 3

-
+