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00:00 Welcome students. This is the uh topic for starting which is on Chapter

00:06 covering functions and structure of the pro a cell. I've split this in

00:13 two parts. So there will be lecture video, continue the part to

00:19 . Okay, so in this section forget that we have learning objectives.

00:27 again just take these as uh you things that you should be familiar with

00:31 . They're going through these lists. you should be familiar with in regards

00:35 the content of the chapter. Um so but the pro periodic sell

00:45 course it has its own unique structures separate from eukaryotic cell as you

00:51 the eukaryotic cell is much larger. put different types of specialized organelles,

00:59 of membrane structures. So it's it's different in that aspect. So we're

01:03 to focus strictly on what the carry cell uh looks like and and the

01:10 functions of the structures within it. , so one of one of the

01:17 you hear, of course you always cell wall typically associated with archaea and

01:22 but and cell envelope. And so the what's the difference between these

01:27 So the cell envelope is really what is the chemical structure slash composition uh

01:38 the inner or cytoplasmic sometimes called plasma ? Right, so the plasma membrane

01:45 membrane is what defines itself because it everything. But then you may have

01:51 beyond that. And that's what we to as the cell envelope.

01:56 And bacteria and archaea can differ in nature the chemical makeup composition of that

02:02 envelope. Okay. Uh every cell far as I know on planet earth

02:08 defined by that what we might call membrane or cytoplasmic membrane. But then

02:14 envelope is what's what's beyond that for particular species. Okay. So we'll

02:19 with um kind of the basic chemical of of of a bacterial cell

02:26 We're looking at coal as an Um without question in any cell,

02:34 the opponent in the in the highest is going to be water.

02:40 All things are basically comprised of 70% . So as a percentage of total

02:47 , water is going to be the prevalent. That shouldn't be surprised.

02:51 when we go beyond that and measure take water out of the equation and

02:54 at the proportion of other constituents of , what's gonna make up the large

03:00 are gonna be basically what I call of informational uh components so related to

03:08 synthesis. Uh DNA replication. So certainly all approach proteins are gonna be

03:16 proteins that do the work of any . And we're gonna be in in

03:20 numbers. And of course then the that make up synthesize, help synthesize

03:24 proteins, ribosomes uh which are made of different RNA molecules. Transfer RNA

03:31 . These are things are involved in protein synthesis as well. So these

03:35 gonna make up a large basically almost quarter of the of the components in

03:41 precarious cell. Um The um ribosomes are are in large numbers because they

03:55 protein synthesis occurs. So probably one the number one functions in any cell

04:00 the production of ribosomes to generate all proteins it needs. Okay, so

04:07 the kind of these informational molecules and um comes cell envelope molecules molecules make

04:18 the cell envelope. So um pepper like, can we talk about that

04:24 little bit, that's the constituent that up the cell wall of bacteria.

04:30 Of course remembering fossil lipids, remember lipid bi layer is comprised of fossil

04:35 um lipid policy sacrifice. Now now sacrifice is going to be unique to

04:46 we call gram negative bacteria. Okay will learn that the cell envelope of

04:50 positive bacteria and gram negative very And they're going to differ in in

04:56 proportions and types of molecules in And play sack arise is the type

05:01 you find in gram negatives. You find that in gram positive cell

05:05 So that's why we see that. wouldn't see that constituent. And if

05:08 were looking at say a bacillus organism is a gram positive. Um And

05:15 amount of petrol glide can will vary on whether it's a gram negative or

05:19 positive bacteria. So some of these may vary in terms of percentage depending

05:24 the particular bacterial uh envelope we're talking . Okay other things of course your

05:32 molecules of metabolism in cells, there's kinds of metabolic pathways being uh that

05:39 working. And they of course have various reactions and products as part of

05:44 organic inorganic ions are prevalent. So like sodium chloride ions um uh and

05:56 types of canines and um airlines as . And poly means these have these

06:03 varied functions. You don't really need to know this but probably means uh

06:09 make maybe like 1/10 of the total . They are involved in many

06:13 A lot of them have functions in to D. N. A.

06:16 of stabilizing it. Others have functions kind of self signaling. So it

06:20 a variety of different functions there. , so that's kind of the chemical

06:26 chemical makeup of pro periodic cell. again, there's going to be different

06:32 somewhat between types. Um So if look at kind of a model of

06:37 bacterial cell, um again that the cell membrane, the plasma membrane or

06:45 membrane, everyone to refer to it of course what defines any cell.

06:50 . And that's going to contain all constituents within. And so of course

06:56 comprised of fossil and there's going to protein is associated with the membrane within

07:01 and associated externally internally to it. So it has functions, you know

07:07 in maintaining having being a barrier you generate ingredients and molecules across the

07:13 So we'll talk about some of that we go on the cytoplasm itself.

07:18 course we just mentioned the various components the cell. So of course that's

07:22 contained in the cytoplasm. The difference cytoplasm and side is all is the

07:27 is always the acquis portion of the . Cytoplasm is basically everything that's within

07:33 inner membrane. The site is also specific for what's the what's the quiz

07:39 of that uh nuclear oid uh that's the DNA is contained. So we'll

07:45 this later. But then the nuclear is not a membrane bound structure.

07:53 . It's basically an area that's occupied the bacterium's chromosome. Okay. Um

08:00 there is it's not a nucleus it's an area occupied by the bacteria's

08:05 Okay so while again uh those that it, most bacteria do then don't

08:13 archaea very and but archaea have something different than pepper that I can uh

08:19 mention that later as well. But uh so of course uh so envelope

08:26 vary whether it's a gram positive or negative in the mouth of like

08:32 Okay. And with gram negatives you there there's actually another layer beyond

08:38 So you have the inner membrane the wall material lit up people like in

08:44 you have this outer membrane and it lots of lipid and sugar material called

08:50 . So very different from the envelope gram positive. And we'll go into

08:55 on that shortly as well. There be a plasma one or more

09:01 These are uh circular segments of N. A. Uh They can

09:08 on their own um uh separate from chromosome being small. They may be

09:16 can be 5000 to 10 or 50,000 base pairs. Um But carrying you

09:25 a few genes so it's gonna maybe from one to ken jeans is

09:31 So but these can be transferred between and we'll talk that's something we'll talk

09:36 in unit two. Uh is how can be transferred as a process called

09:43 . No um inclusions, inclusions comprise number of different structures. Most of

09:52 are things are involved in like food Granules, energy storage Granules, um

10:00 structures related to a certain particular Photosynthetic bacteria may have certain structures that

10:06 don't. So this is kind of we lump into, you know,

10:09 or specialized structures kind of under that . Okay. And then of course

10:15 gonna vary from species to species and their capabilities are. Uh So external

10:22 . So you see the appearance of appendages. So pillai and embry,

10:27 can cook cover the cell uh essentially same thing that made it the same

10:35 component. Um But there can be a difference between those. Uh generally

10:43 those are about attachment but in some it can be attachment plus motion.

10:49 , flagellum of course are all about and so there can be different arrangements

10:54 flagellum as well. Single or groups in different arrangements around the cell but

11:01 all about motility. Okay then you this purple covering coming into view.

11:10 the capsule. Okay so not again everything you see here, everything you

11:15 under cytoplasm a cell will have a cell. Our keel cell will have

11:22 very very variations maybe that they may may not have a cell wall if

11:28 do it may be a novel of gram positive, gram negative. Um

11:34 um external structures that may or may have uh may or may not have

11:39 or may not have a capsule. somebody's gonna be variables that are gonna

11:42 constant. Okay um the capsule is a structure that you find in pathogenic

11:49 causing bacteria. The capsule kind of the periphery of the cell that that

11:59 can hide it from your immune So oftentimes things like the meningitis

12:04 a very thick capsule streptococcus pneumonia that pneumonia has a very thick capsule.

12:09 you'll find these not uncommon among different and virulence factors. So this and

12:18 coming to to play later in the as we talk about medical microbiology but

12:23 factors um are features that enable a to cause disease and very often it's

12:31 like it can be things like a a gelatin capsule um things of that

12:38 can be virulence factors among others. , the Okay, so in terms

12:46 so memory structure, so you likely were exposed to this previously an intro

12:53 . So I'm not gonna spend that time on it. But just recall

12:57 the uh fossil lipid bi layer, ? Called the fluid mosaic model.

13:03 let me just real quick show you little video here. So here's a

13:11 a basic, very basic the membrane . So you see the the fossil

13:16 come together making up the lipid bi . Uh of course then chemically they

13:24 a what we call a semi permeable . Not everything can just freely flow

13:30 . Okay, so you have things things like gasses like oxygen can freely

13:38 flow through other things that may be or charged because this this is a

13:46 core in this membrane and hydrophobic means water. So a curious water cyber

13:54 called polar molecules charged molecules these will have will not be able to diffuse

14:00 that membrane very easily. So you them help in the form of proteins

14:05 as channels to get through. And so as well there's can be

14:11 on the periphery. Okay, external Okay. To provide other functionalities.

14:17 so that's what um and that's what the proteins do in a membrane that

14:25 in the membrane. It's a they that membrane, its functionality is the

14:30 that's involved in a lot of metabolic . So a lot of your process

14:35 cellular respiration. A lot of those are in or associated with the

14:41 Okay. Um so uh membrane in is about you know, it creates

14:48 barrier between the external internal environment of cell uh interface. What the what

14:53 bacterial cell will sense from the outside be translated into a signal internally.

14:59 that conversion of a signal outside being and then a function occurring in the

15:08 . That's going to be happen through , other proteins in the on the

15:13 or within the membrane. Um other of proteins as as you saw involved

15:18 transport. Someone have structural functions um involved in communicate Torrey functions and some

15:26 be real as factors. So attachment example. So um uh so bottom

15:34 is the function member. It has going to basically be due to the

15:39 . It has the selective permeability aspect the protein comes from the lipid bi

15:44 . Right. And so that will transport of materials as well. And

15:50 talk about that shortly. So hop are pro carry out specific um they

15:57 of analogous to cholesterol in our And so they have kind of that

16:02 structure you see there in the yellow helped to reinforce the integrity of the

16:09 . They interact with the with the acid chains of the fossil lipids to

16:16 . You know, we we draw uh fossil lipids like this where we

16:21 a polar head group, right? is analogous to this portion of the

16:28 . Okay. And then we have fatty acid chains which are going to

16:35 hydrophobic. Okay, Water, water . And so when they come together

16:41 form this array where the tails come and the polar heads are facing towards

16:47 sides of the membrane, external Um And so again those fatty acids

16:53 very hydrophobic. It's going to exclude molecules that are that are water

17:00 Right? So that's where proteins come to provide a chance for them to

17:04 in. Um So in terms of and types of of membrane lipid

17:15 So we see the common types political . These are differentiated by length,

17:22 asset change the number of carbons. By the type. Is it?

17:28 it um a straight chain with no bonds, what we call saturated or

17:34 it unsaturated containing double bonds? As see here? Because that will then

17:39 for kinks to occur in chains. this can affect the fluidity of the

17:45 . Ah And so the the cells adjusts, you know, the levels

17:51 saturation, whether there's lots of double and lots of kinks versus more straight

17:56 saturated based on you know, temperatures acute for that. So it will

18:01 the fluidity of the membrane by affecting interactions between these uh fatty acid chains

18:10 each other. So either packed very together or maybe not so much.

18:16 that is dependent on kind of the often the queue for that to

18:21 So the bottom line is for the to maintain an optimal membrane integrity so

18:28 doesn't fall apart uh and so that proteins in there can still be functioning

18:34 well. So there's an optimal level membrane fluidity which everything works optimally or

18:41 best as it can. Um The what you don't want to happen is

18:45 membrane to freeze or the membrane to conditioned so hot that the membrane falls

18:50 . So it still has to adjust parameters so it can maintain that membrane

18:57 whether it's increasing decreasing saturation or um length is another way to do

19:05 And also um bacteria is disability to cyclists cycle ization of fatty acid chains

19:13 form these. This creates a more straight structure where the financial change can

19:22 together. Okay, if needed. bacteria has some unique adaptations, especially

19:28 that particular ones that live in high . So your thermal files right.

19:32 high temperature hypothermia files like uh temperatures excess of 80 C. So um

19:40 has to be some kind of mechanism to maintain membrane integrity as such high

19:46 because that kinetic energy of high temp force those those molecules to come

19:53 And and uh and and obviously member function that way. Um And so

19:59 have a membrane molecules that are based the ether linkage. What you see

20:08 the box there is um bacterial lipids that linkage which tends to be a

20:17 bit more susceptible to cleavage, but especially high camp, but the archaea

20:25 live with these high temps have these link types and they connect in the

20:32 you see there. So there you're the based on what's called a prion

20:37 that forms these glycerol night ether molecules you see there and these will combine

20:47 actually memorized to form very long And you see that they're very long

20:54 chains. Okay, so that will the membrane possible to pack really close

21:01 and allow them to the membrane to together during high temperature, which is

21:06 these archaea bacteria live. Okay, and further it can it can also

21:12 what's called cycle ization into these cyclops a little bit different from the bacterial

21:19 which are this propane type of structure is a pen tain type structure,

21:25 similar principle, it's kind of a chain. They can pack together very

21:32 . And so a membrane that's constructed these kinds of molecules that you see

21:37 uh here here here, that's a that can function at high temperatures because

21:47 the fossils are kind of packed together and the membrane integrity is maintained

21:53 um transport. So we're all familiar , you know, diffusion and principle

22:00 diffusion. Um The uh passive process the movement of molecules passively means is

22:10 by the direction of the concentration Remember that molecules diffuse passively without the

22:19 of energy by moving from an area high to low concentration. They will

22:24 that um spontaneously. And so um a passive process doesn't require energy.

22:32 But there's two mechanisms there in terms of what kind of molecules being moved

22:37 one that's kind of a relatively small non polar type molecules like oxygen or

22:42 . 02. You see there, won't need help getting through a

22:46 Uh They can freely pass through between the fossil lipid bi layer without

22:53 Also, other other small polar molecules water can actually pass through Okay.

23:02 some other types, but for things sugars, amino acids that are that

23:08 bigger that are more polar molecules. markets that are charged, these cannot

23:14 pass through or or diffuse very, slowly that it doesn't help to

23:20 So they need to speed things And as the presence of proteins,

23:24 channels transport proteins that will facilitate Hence the term facilitated diffusion.

23:30 So its diffusion simple diffusion but facilitated the molecules need help getting through

23:36 But that too is all based on a passive process monkeys moving from high

23:42 low concentration. And then of course osmosis, right? That's the movement

23:46 water. So a member of water going to move toward the high solid

23:52 . Right? So selling remember the hyper tonic? Right? So hyper

24:00 uh selling hyper tonic a cell that's tonic. Okay. Has a higher

24:07 of solitude than it does outside. then water will move toward that high

24:12 side to hydrate those salutes. And bacteria precarious in general tend try to

24:20 a hyper tonic interior so water does in right slightly. Okay. So

24:27 doing that we create osmotic pressure and bacteria have a cell wall. Most

24:32 have a cell wall and that will them. So as the water comes

24:36 they expand. But the cell wall of helps to um pressing against the

24:41 membrane or rather that cell wall helps kind of maintain integrity. Right?

24:46 it's a way for the bacteria actually to maintain their shape as well.

24:51 . Um Now not. Yes there passive diffusion processes but um I need

25:01 for a second. I should say missed aqua porn's. So I did

25:07 that water can flow through by simple but there may be times when the

25:13 of water needs to be sped Okay. And that's what aqua porn

25:17 Aquaponics basically protein channel specific for Okay. So the bacterial cells under

25:23 stress into rid of water or take water very rapidly to survive. Then

25:28 porn's will be synthesized and putting the to facilitate that quicker diffusion of

25:36 Okay, so that's that's kind of functions of Aqua porn, czar,

25:40 so active transport. So of you know yourselves in nature, any

25:45 in nature are going to be at mercy of in terms of salutes that

25:51 need of what's in the environment and concentration is present in the environment.

25:55 it's not going to be that all salute needs, so to speak are

25:59 to be set up in a way they can all be come in or

26:04 out passively. Okay material have to ions. They'll have to take them

26:12 uh against the gradient, right? from low to high. Right,

26:18 that involves an active transport process. . And so active requires energy.

26:26 , and the abc transporters and group I've talked about in your chapter

26:33 And those pages but I put it because it's relevant to transport which is

26:37 we're talking about now but you know terms of transport uh you know nutrients

26:44 , nutrients obviously have to be transported . So I've so far used the

26:48 of gasses of course aerobic respiration and . The cells give off co two

26:54 those that inspire and taking the water course. But things like amino acids

26:58 sugars and nutrients need to be taken as well. And so abc transporters

27:04 a very common way to do that well as group translocation. So with

27:11 transporters you see the energy requirement there in a teepee utilizing process. And

27:18 um these are very common for transport amino acids, various sugars. Uh

27:25 so it will have a specific um protein that will bind that sugar and

27:31 bind to the specific transporter and then binding plus a teepee. And analysis

27:38 that channel and the solid comes Okay. But again these are these

27:43 scenarios where the solute concentration out here low and in here it's high.

27:53 we're going against the gradient. Uphill energy for that. Okay, similarly

27:59 group translocation, this takes advantage of property of um that salute diffused independent

28:07 each other. Okay so we have a substrate that is coming to the

28:14 through a specific channel here we're looking glucose and mantle. And the entry

28:21 the each solvent molecule is chemically transformed so glucose to glucose six

28:31 So there's a substance associated with the protein carrying a phosphate group that will

28:36 to the glucose. And now we've a different products. So glucose coming

28:43 glucose six phosphate is what results so can continue to to diffuse in because

28:51 not glucose. That's a committee inside cell it's glucose six phosphate. So

28:58 movement will not come to equilibrium. other words equalized on both sides.

29:04 then stop moving. But because glucose being transformed into glucose six phosphate,

29:10 can continue to diffuse in because glucose not accumulating inside the cell is continually

29:16 transformed into glucose six phosphate. And then glucose continues to diffuse in in

29:23 scenario. Okay. And in actuality the um glucose six phosphate feeds right

29:33 black colossus and sailor respiration. Um self cells can continue taking glucose and

29:41 it for energy as they need as as it keeps being transformed.

29:46 same from Mannitol Mannitol. We see same thing. Mantle's another carbohydrate that

29:51 be used as energy and it's automatically into Mannitol one philosophy. And then

29:56 into the pathway. So again, , Mannitol and glucose here are can

30:02 come in as long as they keep modified to something else and that and

30:07 allows for their transport. Okay? so I in gradients and serve a

30:15 of different purposes. One of the ones here is as an energy storage

30:20 , right? So you see here proton pump, we call it.

30:25 this is an energy driving process that see here. Okay. Expending energy

30:31 we have low concentration here high So we're driving them out.

30:36 That's going to take energy to do . Okay. And energy is coming

30:42 the hydraulics of https. And so so what's the what does this serve

30:49 sell? Well, it's it's a we're basically storing energy here. And

30:54 how how can I say that? because we're accumulating protons on one side

30:59 the membrane. Okay. And that's to have a membrane membrane allows you

31:03 create two sides if you will, you can create a concentration gradient.

31:08 ? So in this case it's an process. So we're low inside

31:13 external. Okay, So that those of protons represents a storage of

31:22 And if we give those protons a to come back into the cells,

31:28 their charge. You're not going to pass through the membrane. So but

31:32 you can draw them in. Which they will freely do.

31:36 They will diffuse in. Right. you give them give them a chance

31:40 they will gladly diffuse from high to . Right? They'll pass that passive

31:44 process. Look, but we have give them a pathway to do

31:47 Okay, so just hold on to idea. Well, I'll show you

31:50 other one. So, here's Okay, so the sucrose transport occurs

31:59 mechanism again, that would that requires because we're pumping sucrose in. It's

32:08 to come in from low to So that too is an active

32:11 So what happens is we couple both . Right. So we'll take the

32:19 gradient proton pump that's pumping protons And we'll have a transport protein that

32:26 also accommodate the protons. So that the sucrose transporter has dual capabilities.

32:33 can transport sucrose and protons and protons down their gradient now. Right.

32:38 the protons are coming this way, by the sucrose transport protein. And

32:46 if it takes energy to pump the out against the gradient, then it

32:53 is a release of energy as they down the gradient. So, a

32:59 process, a passive diffusion is coupled a release of energy as well.

33:06 . And so that energy release as go down their gradient can be used

33:11 pump protons in. I'm sorry, in that's going against their gradient.

33:16 you basically uh use one process to the other. Okay. And this

33:22 a much more efficient system. Because what's the alternative? The alternative is

33:26 go back here if the alternative is with sucrose by itself, is to

33:33 expand an A. T. Okay, or one or two of

33:37 to do this process. But we have to so doesn't have to do

33:41 because it's it's using the energy from transfers to do this. Okay.

33:48 moving down their gradient coupled to this , it helps sucrose come in,

33:53 energy release. So coupling energy processes releasing process with the energy requiring

34:00 Right? So with the expenditure of . T. P. To form

34:04 proton gradient. That's all we Because we can then use the energy

34:08 this proton gradient to fuel the entry sucrose. Right? And this this

34:13 this is a basic concept that happens the time in all living things,

34:22 a energy releasing process with energy requiring . It's basic thermodynamics and it's what

34:30 energetic. Right? And that's what everything in life. Okay. To

34:35 these two processes together and it's done different ways. This is one

34:39 Okay, But there's multiple ways. has done uh basically how life

34:45 Okay. And this is one way it happens. And proton and proton

34:50 are very common to do lots of for cells. Okay. Whether it's

34:56 , it can be movement of the . Um uh lots of lots of

35:02 of a TPS as we'll see in . So that's a very these are

35:06 that are very important for that reason permanent weak acids and bases.

35:13 so uh so these apply to um we gasses weak bases. These uh

35:26 partially dissociate. If you remember that from chemistry um the something like hydrochloric

35:37 will completely disassociate the hydrant irons and ions. Okay, just strong as

35:45 what strong acids do. The arrow all the way to the right,

35:49 getting nothing but protons, nothing but ions. Okay, that's the definition

35:55 a strong acid. Similarly strong base the same thing. They completely disassociate

36:01 products the weak acids week basis. not they only partially dissociate. So

36:07 you end up happening is in your tube. You'll see uh here's a

36:12 weak acid. You'll see this form form and this form in your test

36:19 , weak base. You'll see all these constituents in your test tube.

36:24 , Because you only have partial Okay, so all those constituents,

36:31 products and reactions are present in the tube because we're only having partial

36:35 So what is this place of parole is in markets like this? External

36:40 the cell um that the neutral Right? The the uh weak acid

36:50 this example. Right. Or the base? That's the component that's neutral

36:55 . Right? And can diffuse through membrane. Right? So here's our

36:59 acid diffuse that that form diffuses and in the cell we have partial association

37:06 that can generate production of protons. , ph is a function of hydrogen

37:19 concentration. Okay, so that weak comes in partially dissociate protons increase in

37:27 and the acidity increases ph drops similarly a weak base. Uh Basic enters

37:35 characters a proton from water and now form the ph rises right? The

37:43 iron concentration goes down and hydroxide iron goes up and become basic. Okay

37:51 , so bacterial cells kill cells will to deal with this uh counteract that

37:58 through buffers um to to maintain an internal ph Okay. Um you

38:08 memory impairment, weak acids bases are different types of preservatives and food have

38:13 properties. So like citric acid is common food ingredients. Uh amino benzoate

38:19 , papa P. A. A. Is when you often see

38:22 foods breads for example it's it's meant act as a preservative and acts that

38:28 because these chemicals are weak acids and have this effect themselves. This can

38:35 to inhibit growth basically what it does as a preservative. Okay so the

38:48 procreate cell envelope. So we're going slowly get here into into cell wall

38:55 and uh cell envelope differences and people and so forth. So the bacteria

39:02 killed in the membrane has can have on the species, depends on what

39:07 it is uh can have different levels beyond the inner membrane. Okay.

39:14 from cell wall what's called s layer membrane or variations of it can be

39:22 more complex than that micro bacterial species we'll look at here for example.

39:27 it could even be very simple. there's bacterial types that lack of cell

39:32 altogether. So um so we look we're gonna look at two major groups

39:40 in terms of bacteria and their envelope that were distinguished by the gram stain

39:48 positive gram negative and taxonomic lee. we'll talk a little about bacterial taxonomy

39:55 on semester but there's two major groups are called firm acute and proteus

40:00 Your firm acute group are your gram , propio bacteria are gram negatives.

40:08 Just in general. The grandstand in is um one that it's been around

40:15 a long time but still has value application. Um It is it can

40:22 a initial uh mechanism to begin to bacterial type. Um It can be

40:33 or presumptively diagnostic in cases depending on sample the patient's sample. Uh If

40:41 had strep throat you're luckily had a swab and that throat swab was streaked

40:46 blood auger. And you look for certain type of reaction on blood agar

40:51 that can be presumptive of strep Uh Do a grandstand. So if

40:55 see gram positive cox I. And and they produce a certain reaction on

41:01 harder then it does presumptive that the has strep throat similar. You can

41:05 it with other bodily samples uh at time that may be signaling infection.

41:11 the gram stain of morphology can lead to the proper isolate with the identity

41:18 the isolates. So it has value it is still used to this day

41:22 those purposes. Um regardless. Uh let's look at a little bit about

41:28 structure and function. So for mature have it. And again archaea that

41:35 it's not called pepper. The Black archaea. They have what's called pseudo

41:40 . Black and one of the sugars slightly different but regardless for those that

41:44 it, it serves as a barrier protection support. Uh it is porous

41:52 most things can pass through it um an envelope you'll have as you may

41:59 different, you'll have different levels of and and specificity as you get to

42:05 inner membrane which is going to be more selective than will be,

42:09 a a cell wall around it. , um the base structure. So

42:15 see the term memory there, that's of an older term but you still

42:21 it, they both refer to the thing, Mirian is peptidoglycan and what

42:25 is is basically a polymer sugars to bicycle rides. So that's the glide

42:30 part of the term refers to that , the sugar part that refers to

42:34 peptide part, protein asia as part the of the cell wall dissect

42:40 And you don't need to memorize the structures of these things, but it

42:44 help to memorize kind of how it's out in terms of structure wise.

42:48 so you'll have a a synthesized as single polymer. So they put the

42:54 together in the city close to label this G in the pseudo moronic

43:00 em right. And the cross bridging you see occurs between peptide chains containing

43:10 amino acids and when they're in when you're selling ceramic assets are in

43:17 , they will link up through cross and they connect themselves and that serves

43:22 help maintain the integrity of that um wall. Okay, it must have

43:29 cross bridging or off the wall becomes amenable to to breaking down and the

43:36 can lice. So it's important to those cross bridges in there. Um

43:41 also referred to as a secular. as I mentioned, it wraps around

43:45 cell is a rod safe, sell sell uh as mentioned earlier, will

43:52 to try to keep itself hyper So cell flows water flows in and

43:56 it does, the memory will swell press against that uh cell wall creating

44:02 osmotic pressure. Okay, so it to maintain the shape of the cell

44:07 well. Okay, um the now about bridging, so this is a

44:16 animation that will show you how this . So there's our chain play

44:23 I'd uh look like hand chain there we can close up at some of

44:28 connections. And so you see here peptide sequence. Okay, Ellen

44:34 tannic acid, di amino malic acid an unusual amino acid, it's common

44:41 the to the pepper look like. uh and it's actually at that particular

44:46 acid where the connection occurs. Um and and to al means,

44:52 what happens is and here's the moronic . So the peptides are always linked

44:58 the moronic acid portion. Okay, so they will in proximity to each

45:03 , they will connect as such and terminal valentine is what will leave.

45:11 that occurs and then this occurs. now we have the cross bridging is

45:15 . And um so but again that operating essentially kind of holding that whole

45:21 together among other things as well. so it's critical to have that.

45:27 so uh you know and for that the cross bridging that's that's there's lots

45:34 enzymes involved in synthesis of the cell synthesis of the sugars uh linking the

45:41 together. Uh production of the peptides the peptides together. So lots of

45:48 the bacteria has to synthesize this. so those are all potential targets for

45:54 because of course we don't have cell like this or at all. And

46:00 these antibiotics won't affect us but they target certain of these types of

46:06 So your penicillin of course, is many of these targets these talks the

46:13 that creates these cross bridging and banco is another one that that binds that

46:20 allergy. Okay so if you bind example let me just go back a

46:27 . If you bind here the bank mice and binds here then it's going

46:34 prevent that enzyme from bringing those substrates and linking them. So you don't

46:40 the cross bridging effect. Okay so now of course bacteria have devised evolved

46:47 to get around these issues beta lacto among them this is enzyme resistant types

46:54 that can actually just destroy the penicillin in activating it so destroy penicillin.

47:01 can't affect the cross bridging enzyme vancomycin . Um but you can um that

47:09 resistant to make a mess and have acquired mutations that um created a change

47:21 that they didn't have a terminal. had they have a different molecule

47:27 I think I've seen lactate has been for Halloween for example in some of

47:31 mutants. And if you change the terminal molecule there is not a lien

47:37 something else. Then uh the bank my son won't recognize it and Vancouver

47:44 buy it and do anything. So offers resistance sent by the bacteria to

47:49 antibiotic. Um The other thing to is the peptide sequence there. The

48:00 tannic acid, malic acid alkaline. that's a fairly common sequence. But

48:05 are bacterial types that have the cross but maybe don't have the same amino

48:10 or sequence. Okay, so I wanted to mention that um synthesis of

48:16 like and as mentioned is the extension the chain uh like and change the

48:22 of the sugars. And so you this complex there. So looking at

48:28 we're actually looking at a gram Okay, I know we don't know

48:31 that is yet. But the gram has an outer membrane that you see

48:36 uh inter membrane regardless um synthesis since gonna be very similar to gram positive

48:43 negative. And so you see the like hand change indicated by the arrow

48:47 this multi protein complex that's carrying out synthesis. And then this molecule called

48:53 . R. E. B. talk about that in the part two

48:58 this chapter three material. That's a a bacterial psycho skeletal element. Your

49:05 with these kinds of psycho skeletal features eukaryotic cells, things like acting um

49:12 tubules, um intermediate filaments. These these are the site of skeletal elements

49:19 learned about intro bio. Well, have have some of this as

49:24 M. R. E. Is actually was shown to be kind

49:28 analogous to act influence that ourselves And so you see the M.

49:33 . E. B. Here comes and forms kind of like a a

49:40 for this complex to synthesize. Um wall material. Okay. And the

49:47 . R. E B is a that will complain arise you can add

49:51 units to increase its length and it of acts as a way to get

49:56 occurring along along the path of that . R. E. B

50:02 Okay. Kind of guiding the complex synthesis of it. Okay, so

50:06 see several in the rod shaped it looks like this. So you

50:10 different points where synthesis of materials occurring it's that complex here is being added

50:18 these threads of this M. E. B material. Okay.

50:23 so that sets up so in different types whether it's a rod or

50:27 You can have differences. And how peptidoglycan synthesized. Okay and so you

50:34 here kind of different zones around the of the cell, in this

50:40 in that direction. Okay um in in the cock see you have it

50:48 along the what's called the equity of cell if you will the middle,

50:53 where it occurs. Okay uh you have growth maybe just at one end

50:58 see here. Okay uh that's for types of that's the way it

51:03 But I mean the submissions that carried are gonna be the same but they

51:08 have may have a different mechanism of they where where synthesis occurs in the

51:15 . Okay and so um the but key here is that is synthesized you

51:24 as as as a polymer. The. Okay so comparing gram positive

51:31 gram negative bacteria. Okay they sell of these two types here. You

51:36 the basic differences between one and the . Okay so um the um on

51:48 left the grand positive envelope um one has well it has a very thick

51:57 and that's the thing that you feature is the thickness of it compared to

52:03 gram negative. Right. So much uh material. Uh Tycho acids are

52:12 then we'll talk about that here in second but coke acids um span the

52:18 of the peptidoglycan layer only found in positives. Okay, not in gram

52:27 . So will span the length and as reinforcements. So you'll have the

52:31 bridging plus the tai kok acids which as a as a as a further

52:38 support for that structure which is necessary it's so thick and gram positive and

52:45 to the inner membrane you may And then you may see an S

52:50 as well uh basically protein carbohydrate in that kind of acts as a a

52:57 if you will around the south the gram negative you see on the

53:06 , that has multiple layers. We have the inner membrane of

53:12 But then we have optical I can then we have an outer membrane.

53:17 . And so the outer membrane has lot of lipid material in it.

53:22 , It has transporters in it as . Right. We have the creation

53:27 because of the layers we have what's called a pair of plastic space

53:32 the middle there where that contains the wall. So um so, gram

53:38 envelope is quite different in that Okay, now, the Grand positive

53:45 to speaking, not as not as features to to go over.

53:50 other than cold gasses will help to the cell wall. Okay, and

53:54 see the structure there. Um They served to to help maintain the integrity

54:02 that cell wall within within that to cell membrane. Now the slayer is

54:11 of a net if you will a net of protein could be glycoprotein which

54:16 sugar and protein. Together it's it's porous. Um It's not as well

54:24 . Uh Here's a kind of electron kind of illustrating a model of what

54:32 might look like. Um But the slayer again is not um not a

54:40 is known about it. Uh There some evidence that for those that have

54:44 , it may even be a may be serving an attachment uh can

54:50 protection. Perhaps uh problem with S is that if you culture cells in

54:56 lab and maintain them in the lab contend to lose the S.

55:01 And so for that reason it can to become kind of difficult to figure

55:07 what it does but when the experiments been done it's kind of thought they

55:11 this kind of protective uh function uh for some types of attachment. Maybe

55:20 maybe a function of it as Okay. Um There can even be

55:26 know among archaea can have an Layer and you know have an inner

55:32 an S layer. Nothing else. you'll see some of these variations as

55:36 . Okay and the gram negative envelope um a thinner cell wall as we

55:44 much thinner layer of. Technical I uh it is anchored within that space

55:51 what's called the marine lipoprotein that you here. Okay, so that anchors

56:00 couple of light can in the in uh para plastic space to that inner

56:11 of the outer membrane. It does the uh here's the cross selecting peptide

56:18 there. So um but again we this outer layer, right this outer

56:24 layer up here. Okay. And you can even see within that outer

56:31 layer that both sides of it, know one side of the membrane and

56:36 other side that they actually can differ some places. So you see these

56:40 large uh these right here molecules um what's called lipid, a material attached

56:52 a court policy. Sacha ride attached a long strand of what's called an

56:57 polish Sacha ride. Okay, so very complex structure. Um and so

57:04 we look a little closer at Okay, the outer membrane is porous

57:09 a lot of different chemicals. Um I said before, the the ferocity

57:16 specificity tends to increase as you go in. So the inner membrane is

57:20 to be pretty selective and what allows but um and and for that reason

57:27 have differences in membrane proteins in the membrane versus the inner membrane.

57:34 Um and again, it's specificity maybe not specific in the outer membrane and

57:39 specific certainly in the inner membrane as pass through the and here's kind of

57:46 up structure of this. What we out here in this outer membrane.

57:53 and so um the lipid a material comprises this portion um is linked to

58:04 core policy Sacha right here and then a old place sack right out here

58:10 is a large repeating units of sugar um Can be 30 or 40 or

58:20 units long. Um The it has it can have produced an immunological

58:31 Okay that that that portion that's sitting the outer membrane uh the body can

58:38 produce an immune response to that and where the term oh engine comes

58:42 Okay. We've all heard of Equal . 0157. That's the pathogen strain

58:48 can cause food poisoning um uh has implicated a number of different outbreaks uh

58:56 Chipotle and the produce used lettuce for regardless. So the uh the old

59:05 refers to that old policy Sacha And we have characterized hundreds if not

59:12 of E coli strains and related strains salmonella based on the engine. And

59:18 it's a it's a it's a way to identify them. You can identify

59:21 by that particular having that particular um to the engine and identified that way

59:28 the H engine can also be produced immune response and that's due to the

59:34 of bacteria that has it. Okay that too is actually e coli uh

59:40 can identify equalized through O. And . Engines at least medically important

59:46 Um and now the end of toxic so that that occurs as a result

59:52 the lipid eight material. Okay. only when the gram negative cell dies

59:58 china. So the gram negative cell . If it licenses then the material

60:03 released. Okay. Um and potentially gram negative is can produce this effect

60:12 . Uh the lipid a material okay um produce an immune response by the

60:21 . The problem with it is it say if it's a gram negative infection

60:25 kind of spread throughout the body and the blood. If those cells die

60:30 can release a lot of this material once that travels throughout the body and

60:35 a super hyper immune response and it the body and you can actually go

60:40 shock. So we'll talk more about in the last part of the

60:46 But the end of toxic effects is something to consider if one has a

60:50 negative infection. Okay. And among more well known maybe more important gram

60:58 infections or things like uh meningitis is of those um plague um of course

61:07 the equally strains that cause foodborne disease and others. So infectious gram negative

61:14 are which have to be aware of terms of this this endo toxin effect

61:18 uh can cause problems in persons infected these this toxin effect. Again only

61:26 negatives with this the para plasm that just to mention that, remember that

61:31 have of course now, a layer between that's in between the inner and

61:37 membranes that we call it para plasm it too can contain, you

61:41 particular types of proteins, enzymes and that you won't see in the outer

61:50 or inner membrane. Um Oftentimes they're shuttle proteins that help molecules get from

61:57 outer to the inner membrane. So can see uh some different constituents in

62:02 that you won't see any other Um No a typical types of cell

62:10 . Um Mycoplasma, so we're gonna about to hear the term michael um

62:19 . Okay, so make sure you confuse yourself. Um here.

62:27 so mycoplasma do not have a cell there, bacterial type that lack of

62:32 wall. These mycoplasma species are asking pathogens um and actually infect your own

62:41 of the lungs and cause respiratory Um pneumonia is actually a type of

62:47 , But they do lack of soul there are small, they have among

62:51 smallest genomes of bacterial types, like the 500,000 base parasites. Archaea are

63:00 as I mentioned, they those that a cell wall uh will be similar

63:05 not identical to the pep look like . It's what they call pseudo pep

63:10 like. An or pseudo mirroring, say roughly among archaea uh can give

63:18 percentage, I must say that it's 50 50. Some have some half

63:22 half soul half don't but it's not common as it is in bacteria I

63:29 say. Um Now the micro remember michael bacteria is different from

63:36 Okay so micro bacteria do have a envelope that contains pep level. I

63:41 . Okay so your familiarity with this is tuberculosis, leprosy. And um

63:49 often times when you when you grow whether it's on solid or liquid

63:56 the way it grows and the appearance provides can sometimes be a clue as

64:03 as to you know their their chemical in some cases particularly their cell

64:08 And that's certainly the case for And so you see there in liquid

64:13 is the tube that's on these two on the right here, right here

64:22 has growth occurring just at the air interface. It's all concentrated right there

64:29 the air liquid interface on the right a colony and a very unusual looking

64:33 . If you were to stick your loop into there it would have like

64:38 very kind of crusty texture to Right? So very unusual. And

64:44 all relates to the nature of its envelope. Okay, so here you

64:49 a cross section of a cell envelope micro bacteria. There is the peptic

64:56 counter So they do have so Okay. But they but they mostly

65:01 these other constituents which are rich in . My colleague acids write very long

65:10 chains. Uh carbon chains of these kind of waxy lipids, they call

65:18 colic acids interspersed throughout that envelope along fossil lipids. Um And and of

65:26 attachment there. So the cell wall like can and the folic acids are

65:32 of linked to each other through this on these Robin on chains which is

65:37 type of carbohydrate that you see Okay. And provision for a very

65:44 kind of envelope in these cells. this material is very very hydrophobic.

65:49 they kind of tend to stick together they grow and that's why they look

65:54 they do whether it's in liquid culture of sticking together, repelled by water

65:58 a degree and kind of sitting at top there on a on a plate

66:01 have kind of that waxy crusty appearance that reason. Okay. It's the

66:07 also for you don't really use the stain on these types of bacteria.

66:11 what's called acid fast which involves applying but then using heat to drive it

66:18 the into the cell. And uh but this very thick um envelope uh

66:27 why they grow rather slowly and why can be difficult to treat with antibiotics

66:32 . E. Tuberculosis. Um because that thick envelope slows down diffusion of

66:39 into the cell. So it makes them having to grow slower because the

66:45 of nutrients is slow getting across the . But as well those that are

66:51 like tuberculosis are more resistant to antibiotics the antibiotics have a hard time getting

66:58 there as well. So um it's of the unique things about this this

67:02 type, this this unusual envelope. now structure is external to the salon

67:11 . You just see the three the examples here. So capsule, a

67:15 layer and a biofilm. Okay. the the capsule and slam layers are

67:22 of individual bacterial cell types. The is a result of as a feature

67:28 a collection of microorganisms that are part the biofilm. Okay. The capsule

67:34 a is a is a um assemblage to play sax player. Typically it

67:41 be a place aka right and maybe tenacious and well depending on the species

67:45 it's very well stuck to the It's it's a it's a gene encoded

67:52 uh component. Okay. And uh as I mentioned earlier can be a

67:58 factor. It tightly bound to that surface um covers basically the components on

68:05 periphery. Uh for pathogens you know can it can hide proteins and the

68:12 and things that normally the cell could to immunologically but because they're covered with

68:17 capsule, they resist that effects are as easily detected. And as well

68:23 not as easily figure sanitized by cells try to buy our own cells like

68:30 and neutrophils and things that uh that job is to eat the so to

68:36 , ties. They encapsulated cells tend kind of resist this and artist easily

68:41 ties. So a lot of your pathogens will have a capsule for that

68:46 . Uh The contrast that with the there so slam there is not a

68:51 encoded component, a slime layer is a byproduct of metabolism. Um and

68:59 example growing up lots of sugar or like that, it'll exude some of

69:03 material and kind of it'll just kind hang on to the cells, so

69:08 speak. Um And and as as of a looser assemblage, I mean

69:16 know that in itself can afford some sell some protection just by having this

69:20 around its surface. But again, it's typically something that's just a product

69:26 their by part of their metabolism metabolism secreted out. Okay, the biofilm

69:32 course is Is part of the process we'll talk about. We'll talk about

69:37 in Chapter four. But biofilm is assemblage of of bacteria. Uh and

69:44 not a random process. It's a a gene uh controlled process initiated by

69:53 but one of the one of the of that is to produce this this

69:58 eggs. Op ah Limmer material which place Zachariah generally partially protein in nature

70:05 is kind of the glue that holds all together and that of course is

70:11 by the cells and is external so can kind of put it in this

70:14 this category. Okay so um so are the main things about topics for

70:21 first part. Um So you know kind of a self check if you

70:28 you if you get this uh the basic you know just just draw draw

70:32 rod shape on your paper or your bacterial shape paper and then kind of

70:37 if you can go through and okay are the different components? Um Could

70:43 label it? Could you could you define the functions of some of these

70:47 these structures? Um That's that I it's really yourself checked to see do

70:53 really understand this? Okay and of the the basics of things like I'm

70:59 I'm assuming you already been exposed as bio the transport the osmosis and active

71:06 . Um The of course certainly the the cell envelope difference between gram negative

71:14 positive and understanding that and what that's um compare and contrast those two types

71:20 gram negative gram positive and some of ones that don't fit that mold your

71:24 bacteria, mycoplasma archaea. And then in this section the structure is external

71:31 a cell wall or cell envelope should capsule slime layers biofilm. Okay but

71:38 do do know that you know that envelope? Okay and how it's different

71:43 cell wall, Right. Cell envelope or may not have a cell wall

71:46 on the species. Okay. So two things are mean different. An

71:51 can contain a cell wall. But it doesn't have to so don't

71:56 think those terms are synonymous with each . Okay. Um Alright. So

72:02 will conclude the part one and part . We'll finish up the rest of

72:06 of the procuring of cell structures and . Thank you

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